TkA08G182690 | RubberDandelionOmics

Gene overview

TkA08G182690

Reference: TK1151 Chr: Chr08 Coordinates: 47745356-47754057 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2778 bp · TkA08G182690|TK1151|cDNA

TTGAAGATCCCGCTTAGTGTTATAAAATCAGCCACAAATGAATTTGATAAAACACATCGCATTGGGGGAGGCTCATTTGGTGAGGTCTATGAAGCAACACTTGAACATATTGATAGGAAAGCCTTGTTATCTGGGGAAGAGAAGAATATAAGTGAACTTCCTAAGAAATGCAGCAAAGTAGCCATAAAACTCATATTAAATAGAGAAGACAACGAAGGTGAAGATGGGTTCTATAAGGAAGTTGAAATGCTTACCAACTG...

CDS

Download CDS FASTA

2778 bp · TkA08G182690|TK1151|CDS

TTGAAGATCCCGCTTAGTGTTATAAAATCAGCCACAAATGAATTTGATAAAACACATCGCATTGGGGGAGGCTCATTTGGTGAGGTCTATGAAGCAACACTTGAACATATTGATAGGAAAGCCTTGTTATCTGGGGAAGAGAAGAATATAAGTGAACTTCCTAAGAAATGCAGCAAAGTAGCCATAAAACTCATATTAAATAGAGAAGACAACGAAGGTGAAGATGGGTTCTATAAGGAAGTTGAAATGCTTACCAACTG...

Protein

Download Protein FASTA

925 aa · TkA08G182690|TK1151|PROTEIN

LKIPLSVIKSATNEFDKTHRIGGGSFGEVYEATLEHIDRKALLSGEEKNISELPKKCSKVAIKLILNREDNEGEDGFYKEVEMLTNCDHLNIVYLLGFCKEDGHMILVYEYAAKGSLDKYLLGSGNLGNLSWVHRIQVCIGIACGLEYLHTKDEERIIHRDIKSGNVLLDENLVAKIGDFGLSKLRPKKYHQVNNTLYTDTLAGTKVYMDPEYLETGNMKNESNIYSFGVVLLEMLSGRFANDAEYIKEDVYGIAPVARR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G182690`
TK1151 ID	TkA08G182690
OH-1004 ID	LXL04_032510
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	83.400
Protein coverage (%)	TK1151 100.000 / OH-1004 74.527 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA08G182690

Location Chr08:47745356-47754057 (-)

Description Similar to At5g59700: Probable receptor-like protein kinase At5g59700

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g59700`	Probable receptor-like protein kinase At5g59700.	No verified direct reference in this release
`At3g46290`	Receptor-like protein kinase required for cell elongation during vegetative growth, mostly in a brassinosteroid-(BR-) independent manner.	Three related receptor-like kinases are required for optimal cell elongation in Arabidopsis thaliana.2009 · DOI: 10.1073/pnas.0812346106
`At5g54380`	Receptor-like protein kinase required for cell elongation during vegetative growth, mostly in a brassinosteroid-(BR-) independent manner.	A receptor-like kinase mediates the response of Arabidopsis cells to the inhibition of cellulose synthesis.2007 · DOI: 10.1016/j.cub.2007.05.018 Three related receptor-like kinases are required for optimal cell elongation in Arabidopsis thaliana.2009 · DOI: 10.1073/pnas.0812346106
`At2g39360`	Probable receptor-like protein kinase At2g39360.	No verified direct reference in this release
`At5g24010`	Probable receptor-like protein kinase At5g24010.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_032510 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009741 response to brassinosteroid Biological Process

GO:0009826 unidimensional cell growth Biological Process

GO:0010183 pollen tube guidance Biological Process

GO:0010483 pollen tube reception Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0043680 filiform apparatus Cellular Component

GO:0004672 protein kinase activity Molecular Function

GO:0004674 protein serine/threonine kinase activity Molecular Function

GO:0004714 transmembrane receptor protein tyrosine kinase activity Molecular Function

GO:0005524 ATP binding Molecular Function

KEGG gene cross-reference

ath:AT3G46290

ath:AT5G59700

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.471

Rank 1 · TkA08G182690 · TK1151

Cytoplasm0.332

Rank 2 · TkA08G182690 · TK1151

Nucleus0.258

Rank 3 · TkA08G182690 · TK1151

Endoplasmic reticulum0.062

Rank 4 · TkA08G182690 · TK1151

Mitochondrion0.041

Rank 5 · TkA08G182690 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07714PK_Tyr_Ser-Thr18-322 aa

PF00069Pkinase55-320 aa

PF01636APH152-175 aa

PF07714PK_Tyr_Ser-Thr351-402 aa

PF00069Pkinase352-402 aa

PF12214TPX2_importin589-621 aa

PF07714PK_Tyr_Ser-Thr625-783 aa

PF00069Pkinase634-770 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G182690	`PF07714`	PK_Tyr_Ser-Thr	18	322	9.8e-67	225.7
TkA08G182690	`PF00069`	Pkinase	55	320	3.9e-58	197.6
TkA08G182690	`PF01636`	APH	152	175	0.01	16.3
TkA08G182690	`PF07714`	PK_Tyr_Ser-Thr	351	402	9.8e-67	225.7
TkA08G182690	`PF00069`	Pkinase	352	402	3.9e-58	197.6
TkA08G182690	`PF12214`	TPX2_importin	589	621	0.053	14.6
TkA08G182690	`PF07714`	PK_Tyr_Ser-Thr	625	783	9.8e-67	225.7
TkA08G182690	`PF00069`	Pkinase	634	770	3.9e-58	197.6
TkA08G182690	`PF01636`	APH	683	731	0.01	16.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FN92`	Arabidopsis thaliana	sp\|Q9FN92\|Y5597_ARATH Probable receptor-like protein kinase At5g59700	36.100%	Swiss-Prot	Low
`Q9LX66`	Arabidopsis thaliana	sp\|Q9LX66\|HERK_ARATH Receptor-like protein kinase HERK 1	36.100%	Swiss-Prot	Low
`Q9LK35`	Arabidopsis thaliana	sp\|Q9LK35\|THE1_ARATH Receptor-like protein kinase THESEUS 1	38.100%	Swiss-Prot	Low
`O80623`	Arabidopsis thaliana	sp\|O80623\|Y2393_ARATH Probable receptor-like protein kinase At2g39360	34.300%	Swiss-Prot	Low
`Q9FLW0`	Arabidopsis thaliana	sp\|Q9FLW0\|Y5241_ARATH Probable receptor-like protein kinase At5g24010	36.200%	Swiss-Prot	Low

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