TkA08G180240 | RubberDandelionOmics

Gene overview

TkA08G180240

Reference: TK1151 Chr: Chr08 Coordinates: 47179108-47181994 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1310 bp · TkA08G180240|TK1151|cDNA

TTCACTGCCGTTATTTTTTCTGATCGAAATTGTTGTCATGTTCGTAGCTTCTCTATGGATGGTTTGAGTATTTTTCATCCATTGCTTGCTTTTCTTACTTTCCTAAAAGGATTCTGCTTTCAAAGCATCTTAAAAGCTTCAGTTAGAAAATGCATGCCAGGTTAAAGAAACATGAGACATACAGTGAGCCCATAAAAGACCAAACAAGGCCAACTTCTGCAGGTTTTCCATTAATTGCTATGAAGAGTATCATTTCCACA...

CDS

Download CDS FASTA

360 bp · TkA08G180240|TK1151|CDS

ATGCAGGAACTGTATGGGGCCTCAGGTTACTTCAAGGAGTCAGAAAGCCAAAAGACTAAAACAACCTCGGGAGATGCGAAACTAACAGAAGTTTCAGTAAGTGATAAACTAGAGGAGTTCCGTGCAGCAAAAGAGCATTTCCTACTATCTCATCAGTTGGTGCTGGTGCAAACAGTTCAGTTATTCACTATGAACCAAAACCTAAAACATATGCTGAACTCGATCCAATATCTGGATGGGAAAACTGATATAACTCGGAC...

Protein

Download Protein FASTA

119 aa · TkA08G180240|TK1151|PROTEIN

MQELYGASGYFKESESQKTKTTSGDAKLTEVSVSDKLEEFRAAKEHFLLSHQLVLVQTVQLFTMNQNLKHMLNSIQYLDGKTDITRTVHFGKPSQHEKKCYTDGNAAYKGRQWSIIPKQ

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G180240`
TK1151 ID	TkA08G180240
OH-1004 ID	LXL04_032476
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA08G180240

Location Chr08:47179108-47181994 (+)

Description Similar to OEP64: Outer envelope protein 64, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g36760`	Catalyzes the removal of a penultimate prolyl residue from the N-termini of peptides, such as Arg-Pro-Pro (By similarity).	Identification, purification, and molecular cloning of N-1-naphthylphthalmic acid-binding plasma membrane-associated aminopeptidases from Arabidopsis.2002 · DOI: 10.1104/pp.010519

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_032476 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006508 proteolysis Biological Process

GO:0009609 response to symbiotic bacterium Biological Process

GO:0009877 nodulation Biological Process

GO:0009926 auxin polar transport Biological Process

GO:0010815 bradykinin catabolic process Biological Process

GO:0043069 negative regulation of programmed cell death Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009570 chloroplast stroma Cellular Component

KEGG gene cross-reference

ath:AT3G05350

ath:AT4G36760

mmu:170750

rno:170751

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.435

Rank 1 · TkA08G180240 · TK1151

Cytoplasm0.423

Rank 2 · TkA08G180240 · TK1151

Mitochondrion0.142

Rank 3 · TkA08G180240 · TK1151

Cell membrane0.068

Rank 4 · TkA08G180240 · TK1151

Endoplasmic reticulum0.055

Rank 5 · TkA08G180240 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00557Peptidase_M2428-46 aa

PF00557Peptidase_M2475-104 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G180240	`PF00557`	Peptidase_M24	28	46	0.016	15.7
TkA08G180240	`PF00557`	Peptidase_M24	75	104	0.016	15.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`F4JQH3`	Arabidopsis thaliana	sp\|F4JQH3\|AMPP1_ARATH Aminopeptidase P1	51.600%	Swiss-Prot	High

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