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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G175050
Reference: TK1151 Chr: Chr08 Coordinates: 45798624-45806780 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

4665 bp · TkA08G175050|TK1151|cDNA

GAATGTGTTTACCTTAAAACCCCCACAATTCTCAACCGTCTTACCATGGTATTTTCAGTCATTTCTTTACTACAATGTGGGATTCTCTTGGAAACCTCTTCGTGAGGACGCAGGATAATGACCATGAAGCGCTCCAATTGGCTGCATTACAGAGGTCGCCAACGTTTGTTAGGGCTAGAACTTCCGTGTTCAGGAATTTCGGGGGTGAGTTTACTCTTGTTGATGTTAGTAAGCTTGATGCTGAAGAGAAGAAGGTAGTG...

CDS

Download CDS FASTA

4254 bp · TkA08G175050|TK1151|CDS

ATGTGGGATTCTCTTGGAAACCTCTTCGTGAGGACGCAGGATAATGACCATGAAGCGCTCCAATTGGCTGCATTACAGAGGTCGCCAACGTTTGTTAGGGCTAGAACTTCCGTGTTCAGGAATTTCGGGGGTGAGTTTACTCTTGTTGATGTTAGTAAGCTTGATGCTGAAGAGAAGAAGGTAGTGTTGGATAAATTGGTGCACTCAGTGAATTCAAACCCGGAGCTGTTTTTTGATAGGATTCGACAGCGATTCGATAA...

Protein

Download Protein FASTA

1417 aa · TkA08G175050|TK1151|PROTEIN

MWDSLGNLFVRTQDNDHEALQLAALQRSPTFVRARTSVFRNFGGEFTLVDVSKLDAEEKKVVLDKLVHSVNSNPELFFDRIRQRFDNVDLKFPKVEVRFENLEIDAFVHVGSRALPTLPNSIYNMSEALLRKLRIFPGRRKKLSILNDVSGIIKPSRLTLLLGPPSSGKTTLLLALAGRLGHGLKSSGKITYNGHELNEFVPQRTSSYVSQKDCHMAEMTVRETLQFAECCQGFGYKQDMIMELLRREKNAGIRPDEDLD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G175050
TK1151 IDTkA08G175050
OH-1004 IDLXL04_002604
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)68.600
Protein coverage (%)TK1151 100.000 / OH-1004 97.726
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G175050
LocationChr08:45798624-45806780 (-)
DescriptionSimilar to ABCG32: ABC transporter G family member 32
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g26910 May be a general defense protein (By similarity).
A member of the PLEIOTROPIC DRUG RESISTANCE family of ATP binding cassette transporters is required for the formation of a functional cuticle in Arabidopsis.2011 · DOI: 10.1105/tpc.111.083121

Rice

Reference gene IDPossible functionPapers / DOI
Os01g0177900 May be a general defense protein. No verified direct reference in this release
Os01g0609300 May be a general defense protein. No verified direct reference in this release
Os09g0332700 May be a general defense protein. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_002604 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009914 hormone transport Biological Process
GO:0080051 cutin transport Biological Process
GO:2000032 regulation of secondary shoot formation Biological Process
GO:0005777 peroxisome Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0016020 membrane Cellular Component
GO:0005524 ATP binding Molecular Function
GO:0016887 ATP hydrolysis activity Molecular Function
GO:0140359 ABC-type transporter activity Molecular Function
KEGG gene cross-reference
ath:AT2G26910
dosa:Os01g0177900
dosa:Os01g0609900
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.388
Rank 1 · TkA08G175050 · TK1151
Lysosome / Vacuole0.237
Rank 2 · TkA08G175050 · TK1151
Endoplasmic reticulum0.200
Rank 3 · TkA08G175050 · TK1151
Cytoplasm0.125
Rank 4 · TkA08G175050 · TK1151
Golgi apparatus0.112
Rank 5 · TkA08G175050 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14510ABC_trans_N68-120 aa
PF13191AAA_16136-182 aa
PF25199nSTAND_NTPase5141-181 aa
PF00005ABC_tran146-327 aa
PF09818ABC_ATPase147-177 aa
PF03193RsgA_GTPase148-180 aa
PF13481AAA_25149-181 aa
PF20720nSTAND3149-179 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G175050PF14510ABC_trans_N681204.2e-0627.8
TkA08G175050PF13191AAA_161361827.7e-0730.5
TkA08G175050PF25199nSTAND_NTPase51411810.04614.3
TkA08G175050PF00005ABC_tran1463274.8e-37128.3
TkA08G175050PF09818ABC_ATPase1471770.939.2
TkA08G175050PF03193RsgA_GTPase1481800.06913.7
TkA08G175050PF13481AAA_251491810.0001122.6
TkA08G175050PF20720nSTAND31491790.04314.2
TkA08G175050PF02367TsaE1511820.1612.6
TkA08G175050PF13555AAA_291541765.1e-0523.7
TkA08G175050PF13604AAA_301551770.008216.6
TkA08G175050PF03215Rad171551860.113.3
TkA08G175050PF13476AAA_231561960.0006121.2
TkA08G175050PF13401AAA_221571810.0116.9
TkA08G175050PF13173AAA_141571810.05814.1
TkA08G175050PF05729NACHT1571830.06413.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
O81016Arabidopsis thalianasp|O81016|AB32G_ARATH ABC transporter G family member 3267.500%Swiss-ProtHigh
Q8GU87Oryza sativa subsp. japonicasp|Q8GU87|AB31G_ORYSJ ABC transporter G family member 3166.400%Swiss-ProtHigh
Q0JLC5Oryza sativa subsp. japonicasp|Q0JLC5|AB36G_ORYSJ ABC transporter G family member 3656.300%Swiss-ProtHigh
A3BXL8Oryza sativa subsp. japonicasp|A3BXL8|AB53G_ORYSJ ABC transporter G family member 5355.900%Swiss-ProtHigh

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