TkA08G167780 | RubberDandelionOmics

Gene overview

TkA08G167780

Reference: TK1151 Chr: Chr08 Coordinates: 43879529-43889197 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2088 bp · TkA08G167780|TK1151|cDNA

ATGTCACGATCCGATTATATAATCTCGCGAGCCATATTATCTACAAAAAACGATAATGTTGATGAGATAAATGATGTTTTGATTGGCCGATTCCATGGACAAGAAAAAGTTTACTATAGTTTCGATGAAGCCATAGATGATAGGAATGGCTTATATTCGGTGGAATTCTTGAACTCCATTACCGTAGGGGGTTTACCCCCTCATTACCTCCGGCTTAAAGTCGGATGTCCGGTAATATTGTTACGGAATATTGACCCCGG...

CDS

Download CDS FASTA

2088 bp · TkA08G167780|TK1151|CDS

ATGTCACGATCCGATTATATAATCTCGCGAGCCATATTATCTACAAAAAACGATAATGTTGATGAGATAAATGATGTTTTGATTGGCCGATTCCATGGACAAGAAAAAGTTTACTATAGTTTCGATGAAGCCATAGATGATAGGAATGGCTTATATTCGGTGGAATTCTTGAACTCCATTACCGTAGGGGGTTTACCCCCTCATTACCTCCGGCTTAAAGTCGGATGTCCGGTAATATTGTTACGGAATATTGACCCCGG...

Protein

Download Protein FASTA

695 aa · TkA08G167780|TK1151|PROTEIN

MSRSDYIISRAILSTKNDNVDEINDVLIGRFHGQEKVYYSFDEAIDDRNGLYSVEFLNSITVGGLPPHYLRLKVGCPVILLRNIDPGNGLCNGTRLICRSFQPHVIDAEIAVGQHAGKMVFLPRIPLSPSDDDMFPFKLRRKQFPVRLCFAMTINKAQGQTIPNVGVYLPEPVFSHGQLYVALSRGISRGNTKVLVKSVEKSNVDEFYTSNVVYKEVLKSQKPFKEKLEAQTKDYKRIQEEFSVKSCLYDIVQQKIVKLT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G167780`
TK1151 ID	TkA08G167780
OH-1004 ID	LXL04_032813
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	97.700
Protein coverage (%)	TK1151 31.367 / OH-1004 20.742 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID	`TkA08G167780`
Location	Chr08:43879529-43889197 (-)
Description	Similar to CLV2: Receptor-like protein CLAVATA2
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_032813` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0007165 signal transduction Biological Process GO:0009653 anatomical structure morphogenesis Biological Process GO:0009742 brassinosteroid mediated signaling pathway Biological Process GO:0009908 flower development Biological Process GO:0009909 regulation of flower development Biological Process GO:0010075 regulation of meristem growth Biological Process GO:0010078 maintenance of root meristem identity Biological Process GO:0010088 phloem development Biological Process GO:0030154 cell differentiation Biological Process GO:0040008 regulation of growth Biological Process GO:0045595 regulation of cell differentiation Biological Process GO:0048507 meristem development Biological Process
KEGG gene cross-reference	ath:AT1G65380 dosa:Os04g0576900 osa:4336741 zma:542675 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.517

Rank 1 · TkA08G167780 · TK1151

Nucleus0.377

Rank 2 · TkA08G167780 · TK1151

Mitochondrion0.077

Rank 3 · TkA08G167780 · TK1151

Cell membrane0.062

Rank 4 · TkA08G167780 · TK1151

Endoplasmic reticulum0.051

Rank 5 · TkA08G167780 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF21530Pif1_2B_dom55-98 aa

PF13538UvrD_C_2149-185 aa

PF30379SLU7_N420-432 aa

PF30379SLU7_N458-475 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G167780	`PF21530`	Pif1_2B_dom	55	98	6.5e-20	71.3
TkA08G167780	`PF13538`	UvrD_C_2	149	185	0.0038	17.8
TkA08G167780	`PF30379`	SLU7_N	420	432	0.26	11.5
TkA08G167780	`PF30379`	SLU7_N	458	475	0.26	11.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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