TkA08G165920 | RubberDandelionOmics

Gene overview

TkA08G165920

Reference: TK1151 Chr: Chr08 Coordinates: 43390512-43390961 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

450 bp · TkA08G165920|TK1151|cDNA

ATGGCAGATAGAAAACTTATAGAAAATACATGCAGGATCACCGAAAACTATGATTTATGCATCTCAATCCTACTCTCAAATCCATCAAGCTTACAAGCTGATCTCAAAGGCTTAACTCTTATCTTGCTCGATGTTATTAAAGCTAAAGGATCTGAAACACTTGGAAAGATTACATCATTAAATGAGTCAAACCCAGGGTGGCATGATCCATTGCATGAGTGCTTTGTGAATTACAATGCAGTGGTACAAGAAGATGTACC...

CDS

Download CDS FASTA

450 bp · TkA08G165920|TK1151|CDS

ATGGCAGATAGAAAACTTATAGAAAATACATGCAGGATCACCGAAAACTATGATTTATGCATCTCAATCCTACTCTCAAATCCATCAAGCTTACAAGCTGATCTCAAAGGCTTAACTCTTATCTTGCTCGATGTTATTAAAGCTAAAGGATCTGAAACACTTGGAAAGATTACATCATTAAATGAGTCAAACCCAGGGTGGCATGATCCATTGCATGAGTGCTTTGTGAATTACAATGCAGTGGTACAAGAAGATGTACC...

Protein

Download Protein FASTA

149 aa · TkA08G165920|TK1151|PROTEIN

MADRKLIENTCRITENYDLCISILLSNPSSLQADLKGLTLILLDVIKAKGSETLGKITSLNESNPGWHDPLHECFVNYNAVVQEDVPEAINGVNQGQLQISKGDMMDVSIKSQACDESFMRRSMSLPLTAFNTLIHNLAYLTANFIGLL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G165920`
TK1151 ID	TkA08G165920
OH-1004 ID	LXL04_005432
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	40.300
Protein coverage (%)	TK1151 100.000 / OH-1004 78.421 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA08G165920

Location Chr08:43390512-43390961 (+)

Description Similar to C/VIF1: Cell wall / vacuolar inhibitor of fructosidase 1

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g47960`	Inhibits fructosidases from vacuoles (vacuolar invertase VI).	In Arabidopsis thaliana, the invertase inhibitors AtC/VIF1 and 2 exhibit distinct target enzyme specificities and expression profiles.2004 · DOI: 10.1016/j.febslet.2004.07.062

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_005432 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009827 plant-type cell wall modification Biological Process

GO:0009860 pollen tube growth Biological Process

GO:0043086 negative regulation of catalytic activity Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005773 vacuole Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0012505 endomembrane system Cellular Component

GO:0048046 apoplast Cellular Component

GO:0090404 pollen tube tip Cellular Component

GO:0004857 enzyme inhibitor activity Molecular Function

GO:0046910 pectinesterase inhibitor activity Molecular Function

KEGG gene cross-reference

ath:AT1G47960

ath:AT3G17220

ath:AT5G64620

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.357

Rank 1 · TkA08G165920 · TK1151

Cytoplasm0.247

Rank 2 · TkA08G165920 · TK1151

Lysosome / Vacuole0.174

Rank 3 · TkA08G165920 · TK1151

Endoplasmic reticulum0.133

Rank 4 · TkA08G165920 · TK1151

Cell membrane0.065

Rank 5 · TkA08G165920 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF15106TMEM1563-27 aa

PF04043PMEI5-130 aa

PF19903DUF637664-102 aa

PF15106TMEM156101-127 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G165920	`PF15106`	TMEM156	3	27	0.12	12.4
TkA08G165920	`PF04043`	PMEI	5	130	2.9e-12	47.7
TkA08G165920	`PF19903`	DUF6376	64	102	0.13	13.3
TkA08G165920	`PF15106`	TMEM156	101	127	0.12	12.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`F4HWQ8`	Arabidopsis thaliana	sp\|F4HWQ8\|CVIF1_ARATH Cell wall / vacuolar inhibitor of fructosidase 1	31.700%	Swiss-Prot	Medium

JBrowse

View in Genome Browser

Gene Card