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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G161650
Reference: TK1151 Chr: Chr08 Coordinates: 42175521-42178079 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1540 bp · TkA08G161650|TK1151|cDNA

CTCCCTCCCAGTTTATTCTTCTGCAAGAAACGTTTTTCCGTCCAAGAGATCCAAAGGAAACCTTCCCCTCCGGTAGCAACAAAGGAAAGCGATGCCGACTGACATAGAAGACGAGATTAGAGACGAGAAGAACCCTCCCCCACTAGACGAAGACGATATCGCTCTTCTCAAGACTTATGGATTGGGACCTTATTCTACAAGCATCAAGAAAGCTGAAAAAGATGTCAAGGAAATGGCCAAAAGGATCAACGATCTATGTG...

CDS

Download CDS FASTA

1281 bp · TkA08G161650|TK1151|CDS

ATGCCGACTGACATAGAAGACGAGATTAGAGACGAGAAGAACCCTCCCCCACTAGACGAAGACGATATCGCTCTTCTCAAGACTTATGGATTGGGACCTTATTCTACAAGCATCAAGAAAGCTGAAAAAGATGTCAAGGAAATGGCCAAAAGGATCAACGATCTATGTGGTATCAAGGAGTCAGACACTGGTTTAGCTGCACCCAGCCAATGGGATCTTGTTTCTGATAAACAAATGATGCAAGAAGAACAACCTCTTCA...

Protein

Download Protein FASTA

426 aa · TkA08G161650|TK1151|PROTEIN

MPTDIEDEIRDEKNPPPLDEDDIALLKTYGLGPYSTSIKKAEKDVKEMAKRINDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIINPNTEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G161650
TK1151 IDTkA08G161650
OH-1004 IDLXL04_009114
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)98.400
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G161650
LocationChr08:42175521-42178079 (-)
DescriptionSimilar to RPT1A: 26S proteasome regulatory subunit 7 homolog A
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g53750 The 26S proteasome is involved in the ATP-dependent degradation of ubiquitinated proteins. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os02g0784700 The 26S proteasome is involved in the ATP-dependent degradation of ubiquitinated proteins. No verified direct reference in this release
Os06g0192600 The 26S proteasome is involved in the ATP-dependent degradation of ubiquitinated proteins. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_009114 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006511 ubiquitin-dependent protein catabolic process Biological Process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process Biological Process
GO:0000502 proteasome complex Cellular Component
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0008540 proteasome regulatory particle, base subcomplex Cellular Component
GO:0005524 ATP binding Molecular Function
GO:0016887 ATP hydrolysis activity Molecular Function
GO:0036402 proteasome-activating activity Molecular Function
KEGG gene cross-reference
ath:AT1G53750
dosa:Os06g0192600
pper:18783658
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.537
Rank 1 · TkA08G161650 · TK1151
Nucleus0.491
Rank 2 · TkA08G161650 · TK1151
Cell membrane0.088
Rank 3 · TkA08G161650 · TK1151
Endoplasmic reticulum0.050
Rank 4 · TkA08G161650 · TK1151
Mitochondrion0.047
Rank 5 · TkA08G161650 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF21236OB_PRS779-147 aa
PF16450Prot_ATP_ID_OB_C103-138 aa
PF05673DUF815159-270 aa
PF12775AAA_7194-227 aa
PF13191AAA_16203-226 aa
PF06068TIP49203-241 aa
PF05496RuvB_N204-270 aa
PF00004AAA205-338 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G161650PF21236OB_PRS7791476.4e-40135.3
TkA08G161650PF16450Prot_ATP_ID_OB_C1031380.311.7
TkA08G161650PF05673DUF8151592700.008516.0
TkA08G161650PF12775AAA_71942270.0116.1
TkA08G161650PF13191AAA_162032260.0002922.1
TkA08G161650PF06068TIP492032410.02514.5
TkA08G161650PF05496RuvB_N2042700.00617.1
TkA08G161650PF00004AAA2053381.7e-41142.5
TkA08G161650PF07724AAA_22052982.7e-0525.0
TkA08G161650PF13401AAA_222052337e-0523.9
TkA08G161650PF07728AAA_52052740.0002222.0
TkA08G161650PF20720nSTAND32053200.006516.9
TkA08G161650PF00910RNA_helicase2052590.01416.6
TkA08G161650PF13671AAA_332052320.02715.5
TkA08G161650PF13173AAA_142052740.03914.7
TkA08G161650PF24883NPHP3_N2052260.09513.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SSB5Arabidopsis thalianasp|Q9SSB5|PRS7A_ARATH 26S proteasome regulatory subunit 7 homolog A95.800%Swiss-ProtHigh
P0DKJ9Oryza sativa subsp. japonicasp|P0DKJ9|PRS7A_ORYSJ 26S proteasome regulatory subunit 7A95.100%Swiss-ProtHigh
P0DKK0Oryza sativa subsp. japonicasp|P0DKK0|PRS7B_ORYSJ 26S proteasome regulatory subunit 7B95.100%Swiss-ProtHigh

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