RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G151800
Reference: TK1151 Chr: Chr08 Coordinates: 39590332-39601579 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA No cDNA sequence available

cDNA

No cDNA sequence is available for this reference.

CDS

Download CDS FASTA

2865 bp · TkA08G151800|TK1151|CDS

ATGGCTTGGTTTAGTGGGAAGGTCTCGTTAGGGAACTTCCCGGATTTAGCTGGGGCAGTTAACAAGTTAAGTGAGAGCGTTAAGAATATTGAGAAGAATTTCGACAGTGCTCTTGGATTTGAAGAGAAGGCTGGTGGTACTAGTTCCACCACTGAAGCTACAGGGTTATGGCCTTCTGACTTAATGGGCTTTATGGGACAAAAAGGTGAAGATGACACATCTGAGTCCACAAAAAGCCTTGAAACTTCTAGTCCTCAACA...

Protein

Download Protein FASTA

954 aa · TkA08G151800|TK1151|PROTEIN

MAWFSGKVSLGNFPDLAGAVNKLSESVKNIEKNFDSALGFEEKAGGTSSTTEATGLWPSDLMGFMGQKGEDDTSESTKSLETSSPQHSKEKEGTEADNSADSIKEHHQSVSEESAETLKPEEHEDHHTGTNMEVLQETNTEKPMEANISMQNEHEDVTDKLQETNIVEKSEAENISISDETTIDATNHSKDEVDTQLVSSVDDVDQSEVVPSEKLESVQDESAVGTSKGNEVHPVSDVQKDEDGERIQSEKSSHEVSANE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA08G151800
TK1151 IDTkA08G151800
OH-1004 IDLXL04_032130
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)96.200
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G151800
LocationChr08:39590332-39601579 (+)
DescriptionSimilar to GC5: Golgin candidate 5
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g79830 Golgi matrix protein playing a role in tethering of vesicles to Golgi membranes and in maintaining the overall structure of the Golgi apparatus. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_032130 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0001675 acrosome assembly Biological Process
GO:0001819 positive regulation of cytokine production Biological Process
GO:0006351 DNA-templated transcription Biological Process
GO:0007286 spermatid development Biological Process
GO:0007289 spermatid nucleus differentiation Biological Process
GO:0010629 negative regulation of gene expression Biological Process
GO:0030317 flagellated sperm motility Biological Process
GO:0030521 androgen receptor signaling pathway Biological Process
GO:0032275 luteinizing hormone secretion Biological Process
GO:0042742 defense response to bacterium Biological Process
GO:0045944 positive regulation of transcription by RNA polymerase II Biological Process
GO:0061136 regulation of proteasomal protein catabolic process Biological Process
KEGG gene cross-reference
ath:AT1G79830
hsa:7110
mmu:232286
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.572
Rank 1 · TkA08G151800 · TK1151
Cytoplasm0.482
Rank 2 · TkA08G151800 · TK1151
Endoplasmic reticulum0.129
Rank 3 · TkA08G151800 · TK1151
Nucleus0.097
Rank 4 · TkA08G151800 · TK1151
Cell membrane0.079
Rank 5 · TkA08G151800 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF12325TMF_TATA_bd20-33 aa
PF12329TMF_DNA_bd75-94 aa
PF24319DUF749184-116 aa
PF12325TMF_TATA_bd88-145 aa
PF24319DUF7491116-164 aa
PF28175T4SS_LegC2C7135-174 aa
PF12329TMF_DNA_bd161-174 aa
PF12325TMF_TATA_bd167-218 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G151800PF12325TMF_TATA_bd20332.2e-2899.4
TkA08G151800PF12329TMF_DNA_bd75944.2e-1246.6
TkA08G151800PF24319DUF7491841160.003818.1
TkA08G151800PF12325TMF_TATA_bd881452.2e-2899.4
TkA08G151800PF24319DUF74911161640.003818.1
TkA08G151800PF28175T4SS_LegC2C71351740.008415.8
TkA08G151800PF12329TMF_DNA_bd1611744.2e-1246.6
TkA08G151800PF12325TMF_TATA_bd1672182.2e-2899.4
TkA08G151800PF24319DUF74912412830.003818.1
TkA08G151800PF12325TMF_TATA_bd2462902.2e-2899.4
TkA08G151800PF28175T4SS_LegC2C72473380.008415.8
TkA08G151800PF12329TMF_DNA_bd2592834.2e-1246.6
TkA08G151800PF12325TMF_TATA_bd3293982.2e-2899.4
TkA08G151800PF12329TMF_DNA_bd3514014.2e-1246.6
TkA08G151800PF24319DUF74913544170.003818.1
TkA08G151800PF28175T4SS_LegC2C73564340.008415.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q0WVL7Arabidopsis thalianasp|Q0WVL7|GOGC5_ARATH Golgin candidate 558.500%Swiss-ProtHigh

JBrowse

View in Genome Browser