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How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G142680
Reference: TK1151 Chr: Chr08 Coordinates: 37181095-37181448 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

354 bp · TkA08G142680|TK1151|cDNA

ATTCCATCTGGGTTTTTCCCATTTCGTCCGGGTTTTTCCGACCACCACGCCGACGATCTTCACCTCCGCTTCCACCACCACGCCGACGACCTCCACTCCAACGCGTCCTCCGCTCGGCTCCGACCACCATTCCGACGAGAACTCCACTCCGACGACCTCGACGACCAGCTACACTTCTCTCTCTTCTCAAAACCCGGATGGAATGGGAAAAATCAAAACCCGGACGGAATGGGAAAAACCCGGACGGAATGGGAAAAACC...

CDS

Download CDS FASTA

354 bp · TkA08G142680|TK1151|CDS

ATTCCATCTGGGTTTTTCCCATTTCGTCCGGGTTTTTCCGACCACCACGCCGACGATCTTCACCTCCGCTTCCACCACCACGCCGACGACCTCCACTCCAACGCGTCCTCCGCTCGGCTCCGACCACCATTCCGACGAGAACTCCACTCCGACGACCTCGACGACCAGCTACACTTCTCTCTCTTCTCAAAACCCGGATGGAATGGGAAAAATCAAAACCCGGACGGAATGGGAAAAACCCGGACGGAATGGGAAAAACC...

Protein

Download Protein FASTA

117 aa · TkA08G142680|TK1151|PROTEIN

IPSGFFPFRPGFSDHHADDLHLRFHHHADDLHSNASSARLRPPFRRELHSDDLDDQLHFSLFSKPGWNGKNQNPDGMGKTRTEWEKPGWKINTRMEWEKPGRNGKNPDRIVKTRMGF

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA08G142680
TK1151 IDTkA08G142680
OH-1004 IDLXL04_013587
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)72.500
Protein coverage (%)TK1151 43.590 / OH-1004 14.652
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G142680
LocationChr08:37181095-37181448 (-)
DescriptionSimilar to ORC1B: Origin of replication complex subunit 1B
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_013587 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006260 DNA replication Biological Process
GO:0006270 DNA replication initiation Biological Process
GO:0006277 DNA amplification Biological Process
GO:0006351 DNA-templated transcription Biological Process
GO:0006355 regulation of DNA-templated transcription Biological Process
GO:0009567 double fertilization forming a zygote and endosperm Biological Process
GO:0009744 response to sucrose Biological Process
GO:0033314 mitotic DNA replication checkpoint signaling Biological Process
GO:0048661 positive regulation of smooth muscle cell proliferation Biological Process
GO:0070318 positive regulation of G0 to G1 transition Biological Process
GO:0000781 chromosome, telomeric region Cellular Component
GO:0000808 origin recognition complex Cellular Component
KEGG gene cross-reference
ath:AT4G12620
ath:AT4G14700
dme:Dmel_CG10667
dosa:Os06g0187000
rno:313479
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.638
Rank 1 · TkA08G142680 · TK1151
Cytoplasm0.370
Rank 2 · TkA08G142680 · TK1151
Extracellular0.058
Rank 3 · TkA08G142680 · TK1151
Mitochondrion0.056
Rank 4 · TkA08G142680 · TK1151
Cell membrane0.048
Rank 5 · TkA08G142680 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

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