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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G141910
Reference: TK1151 Chr: Chr08 Coordinates: 36986948-36997893 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1029 bp · TkA08G141910|TK1151|cDNA

CACCACTACAACAGCGCTGCACACTTCACCAGTCACCACACTGCATAAACTCCAACCACCGCCCGTCTTTCTCTGACGTCGCCGCCGCCGCCGAGACGGAGAAACAAAGAAGACGCCATGGAATTCCTGAAGTTAATCTGCCCTAGTTCTCCTTACATATGGGATGGAAATGGAATTTCAAGATGCTTGAACAGATTCACAATGTTAGGTTTCACCACAAGTATAATAACATTCATCATAATCATTATCCTTTCAATTAC...

CDS

Download CDS FASTA

4362 bp · TkA08G141910|TK1151|CDS

ATGGAATTCCTGAAGTTAATCTGCCCTAGTTCTCCTTACATATGGGATGGAAATGGAATTTCAAGATGCTTGAACAGATTCACAATGTTAGGTTTCACCACAAGTATAATAACATTCATCATAATCATTATCCTTTCAATTACTGAAAGGACTACCAGAGGACACAGAAAGATATACTTCTATGAGAAGGTCTTCTTGCTCATTCTACCTGCCATTGATGCATGCATTGCATGTTTTGACATAATTACCCTTTTGAGTAA...

Protein

Download Protein FASTA

1453 aa · TkA08G141910|TK1151|PROTEIN

MEFLKLICPSSPYIWDGNGISRCLNRFTMLGFTTSIITFIIIIILSITERTTRGHRKIYFYEKVFLLILPAIDACIACFDIITLLSNTRSGHPALYHDWLLRCSQLLVWATILIVSRFDCWLFVLSNRILCFWWIIKTIFAIPILQATFSSLEVFSCINESLIVSVDILFCILINIIRIKQTSRRNSSMEESLLIGETDNHFRSKSSNPGVVVRFWNLMTFRCINMVMEHGVKKQLDFGDLLQLPNDMDASVCHDTLLNC...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA08G141910
TK1151 IDTkA08G141910
OH-1004 IDLXL04_032017
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)99.800
Protein coverage (%)TK1151 69.305 / OH-1004 79.984
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G141910
LocationChr08:36986948-36997893 (+)
DescriptionSimilar to ABCC13: ABC transporter C family member 13
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g07680 Pump for glutathione S-conjugates. No verified direct reference in this release
At3g13090 Pump for glutathione S-conjugates. No verified direct reference in this release
At3g13100 Pump for glutathione S-conjugates. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_032017 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006691 leukotriene metabolic process Biological Process
GO:0006869 lipid transport Biological Process
GO:0015711 organic anion transport Biological Process
GO:0045087 innate immune response Biological Process
GO:0055085 transmembrane transport Biological Process
GO:0071716 leukotriene transport Biological Process
GO:0000325 plant-type vacuole Cellular Component
GO:0005576 extracellular region Cellular Component
GO:0005765 lysosomal membrane Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0009925 basal plasma membrane Cellular Component
GO:0005524 ATP binding Molecular Function
KEGG gene cross-reference
ath:AT2G07680
hsa:89845
mmu:224814
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.401
Rank 1 · TkA08G141910 · TK1151
Cell membrane0.293
Rank 2 · TkA08G141910 · TK1151
Endoplasmic reticulum0.153
Rank 3 · TkA08G141910 · TK1151
Cytoplasm0.142
Rank 4 · TkA08G141910 · TK1151
Golgi apparatus0.108
Rank 5 · TkA08G141910 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF20693YobI-ATPase126-185 aa
PF20703nSTAND1248-263 aa
PF00664ABC_membrane288-554 aa
PF05783DLIC612-662 aa
PF07693KAP_NTPase617-679 aa
PF00005ABC_tran622-755 aa
PF12775AAA_7627-658 aa
PF13555AAA_29629-651 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G141910PF20693YobI-ATPase1261858.06.6
TkA08G141910PF20703nSTAND12482630.00218.6
TkA08G141910PF00664ABC_membrane2885548.2e-62210.1
TkA08G141910PF05783DLIC6126621.18.8
TkA08G141910PF07693KAP_NTPase6176790.005816.6
TkA08G141910PF00005ABC_tran6227551.2e-44153.0
TkA08G141910PF12775AAA_76276580.05513.7
TkA08G141910PF13555AAA_296296511.5e-0525.4
TkA08G141910PF13191AAA_166306574.9e-0524.6
TkA08G141910PF03193RsgA_GTPase6316665.3e-0730.3
TkA08G141910PF20703nSTAND16316510.00218.6
TkA08G141910PF25683URGCP_GTPase6316540.1511.5
TkA08G141910PF02463SMC_N6336563.4e-0833.9
TkA08G141910PF13401AAA_226336540.0006220.8
TkA08G141910PF13476AAA_236336520.002319.3
TkA08G141910PF00931NB-ARC6336610.07213.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SKX0Arabidopsis thalianasp|Q9SKX0|AB13C_ARATH ABC transporter C family member 1359.900%Swiss-ProtHigh
Q8VZZ4Arabidopsis thalianasp|Q8VZZ4|AB6C_ARATH ABC transporter C family member 641.200%Swiss-ProtMedium
Q9LK62Arabidopsis thalianasp|Q9LK62|AB7C_ARATH ABC transporter C family member 741.100%Swiss-ProtMedium

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