TkA08G136960 | RubberDandelionOmics

Gene overview

TkA08G136960

Reference: TK1151 Chr: Chr08 Coordinates: 35581618-35584594 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1920 bp · TkA08G136960|TK1151|cDNA

CCCACATTTAGCATAGTCATAAACGGGCCCAGCACCTACTCCAAAATCCCATCGCAGCCACATTTCTAGCTAAACTGATATACCCAAACTTTCACTCATCCTCGCATGGCTCAAAATGGAATCAAGGATTACCGCAAAAGGGTCACCACTTGAATCACGCACATAATGAACAAAACCCCTCTAATTCTTCACATGTTCCTCCAATTTCACAAATAATCCTGTAAGAAGTTGGAACACAAGACAGACGCACAGTGTCACTA...

CDS

Download CDS FASTA

1440 bp · TkA08G136960|TK1151|CDS

ATGCCTCCTGATTTCAAAGAATTTCAAGAGAAGTTTTCTACTGGCTTTAGACCATGGCAACGCTCCGTTCAATTCTGGGTCCGAGCTGTCGACATCTACACTGGTTATAAGGTGTTTCAAGTTCGAGTTAATTTCGAGAAGGATGTGGAGAAAGCAGAAGCAATGTGGGAGAGACAACATGAAGTAGCCGCTGATAAAGTTTATTCCATGTGTTCCGACATGGGTGGATTCTTTCTCAAGATTGCTCAAATTCTTGGAAA...

Protein

Download Protein FASTA

479 aa · TkA08G136960|TK1151|PROTEIN

MPPDFKEFQEKFSTGFRPWQRSVQFWVRAVDIYTGYKVFQVRVNFEKDVEKAEAMWERQHEVAADKVYSMCSDMGGFFLKIAQILGKPDLAPAAWVRRLVTLCDQAPATPSNMVQLVLEKELGKSVDEMFDRFDWDPIGSASIAQVHRARLKGVKNDVVVKVQHPGVQELMMTDLRNLKAFALCIQKTDVKFDFFSVCKEMEKQIGYEFDFTREADAMDRIRTFLLSINRKSPIKVPRVISNSVTRRVLAMEYIDGVPIL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G136960`
TK1151 ID	TkA08G136960
OH-1004 ID	LXL04_031925
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA08G136960

Location Chr08:35581618-35584594 (+)

Description Similar to ABC1K8: Protein ACTIVITY OF BC1 COMPLEX KINASE 8, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g64940`	May participate in responses to oxidative stress, high light and heavy metals.	Loss of the Atypical Kinases ABC1K7 and ABC1K8 Changes the Lipid Composition of the Chloroplast Membrane.2015 · DOI: 10.1093/pcp/pcv046
`At3g07700`	Involved in resistance to oxidative stress.	Loss of the Atypical Kinases ABC1K7 and ABC1K8 Changes the Lipid Composition of the Chloroplast Membrane.2015 · DOI: 10.1093/pcp/pcv046

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_031925 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006979 response to oxidative stress Biological Process

GO:0007005 mitochondrion organization Biological Process

GO:0007623 circadian rhythm Biological Process

GO:0009644 response to high light intensity Biological Process

GO:0010150 leaf senescence Biological Process

GO:0010637 negative regulation of mitochondrial fusion Biological Process

GO:0034599 cellular response to oxidative stress Biological Process

GO:0042542 response to hydrogen peroxide Biological Process

GO:0046467 membrane lipid biosynthetic process Biological Process

GO:0046686 response to cadmium ion Biological Process

GO:0055088 lipid homeostasis Biological Process

GO:1901031 regulation of response to reactive oxygen species Biological Process

KEGG gene cross-reference

ath:AT5G64940

gga:423382

hsa:57143

xla:443831

xtr:496824

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.776

Rank 1 · TkA08G136960 · TK1151

Mitochondrion0.199

Rank 2 · TkA08G136960 · TK1151

Cytoplasm0.063

Rank 3 · TkA08G136960 · TK1151

Cell membrane0.032

Rank 4 · TkA08G136960 · TK1151

Nucleus0.032

Rank 5 · TkA08G136960 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01636APH65-101 aa

PF03109ABC1102-353 aa

PF01163RIO1160-181 aa

PF01636APH214-261 aa

PF01163RIO1231-329 aa

PF00069Pkinase244-334 aa

PF01636APH298-326 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G136960	`PF01636`	APH	65	101	0.00054	20.5
TkA08G136960	`PF03109`	ABC1	102	353	1.9e-62	211.3
TkA08G136960	`PF01163`	RIO1	160	181	3.9e-05	24.1
TkA08G136960	`PF01636`	APH	214	261	0.00054	20.5
TkA08G136960	`PF01163`	RIO1	231	329	3.9e-05	24.1
TkA08G136960	`PF00069`	Pkinase	244	334	0.0026	17.9
TkA08G136960	`PF01636`	APH	298	326	0.00054	20.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q93Y08`	Arabidopsis thaliana	sp\|Q93Y08\|AB1K8_ARATH Protein ACTIVITY OF BC1 COMPLEX KINASE 8, chloroplastic	30.200%	Swiss-Prot	Medium
`B9DGY1`	Arabidopsis thaliana	sp\|B9DGY1\|AB1K7_ARATH Protein ACTIVITY OF BC1 COMPLEX KINASE 7, chloroplastic	30.700%	Swiss-Prot	Medium

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