TkA08G130720 | RubberDandelionOmics

Gene overview

TkA08G130720

Reference: TK1151 Chr: Chr08 Coordinates: 33913598-33916141 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1707 bp · TkA08G130720|TK1151|cDNA

CCGGAACTACTCAAATTCCGGATCCAGCTAAGTCGCATTTCTTATGCCACAAAAATCGTCCGGAACTACTCAAATTCCGAATCCTTCTATCTCGGCCCCAAAAGTCCTTTCATTTACTCCAAATTCGCACAATCAGATGGAGTATTTCTGATTTTGGAAGCGACTGTGTGTGTGTGTGTGTTTATCTGAAGGAGGGCGGCAGTGGTTGGGAACGAGTCGGCCTTCATCTCTCTAAAATCCAAACACGGAAGCCCTAATTT...

CDS

Download CDS FASTA

510 bp · TkA08G130720|TK1151|CDS

ATGGTTGATGCTCCATCAGCCAAGAAAGCACCACAAACACCTGCAACCCCTCAAGCTGGTGGTTCAAAAACTTTGTTCGTGGGCAATCTAAATTTCAGTTTATTCCAAAAGATTGCCCGTATGTCTATTCCAAAAGATTACGAATCTGGTGGTCCTAAAGGGGTTGCATTTATCAACTTCAATGATAGTGCTGCATTGAACAAAGCTTTGGAACTGAGTGGTACTGAAGTTGCAGGCGGTACACTTACTGTTGAGGAAGC...

Protein

Download Protein FASTA

169 aa · TkA08G130720|TK1151|PROTEIN

MVDAPSAKKAPQTPATPQAGGSKTLFVGNLNFSLFQKIARMSIPKDYESGGPKGVAFINFNDSAALNKALELSGTEVAGGTLTVEEAKPRGDSGGFSGGRGGGRGFDGGRSGGRGGRFGGRDGGGFSGGRGGRFSGGRDGGRGGRGGRGGRGPNRPRMATWYRKEDKFC

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G130720`
TK1151 ID	TkA08G130720
OH-1004 ID	LXL04_025648
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	44.200
Protein coverage (%)	TK1151 56.805 / OH-1004 32.907 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA08G130720

Location Chr08:33913598-33916141 (+)

Description Similar to NUCL2: Nucleolin 2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g18610`	Involved in pre-rRNA processing and ribosome assembly.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os08g0192900`	Involved in pre-rRNA processing and ribosome assembly.	No verified direct reference in this release
`Os04g0620700`	Involved in pre-rRNA processing and ribosome assembly.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_025648 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006364 rRNA processing Biological Process

GO:0006397 mRNA processing Biological Process

GO:0008380 RNA splicing Biological Process

GO:0010305 leaf vascular tissue pattern formation Biological Process

GO:0010588 cotyledon vascular tissue pattern formation Biological Process

GO:0042254 ribosome biogenesis Biological Process

GO:0045893 positive regulation of DNA-templated transcription Biological Process

GO:0048024 regulation of mRNA splicing, via spliceosome Biological Process

GO:0048364 root development Biological Process

GO:0048366 leaf development Biological Process

GO:0048367 shoot system development Biological Process

KEGG gene cross-reference

ath:AT1G48920

ath:AT3G18610

dosa:Os04g0620700

dosa:Os08g0192900

hsa:55147

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.799

Rank 1 · TkA08G130720 · TK1151

Cytoplasm0.398

Rank 2 · TkA08G130720 · TK1151

Extracellular0.102

Rank 3 · TkA08G130720 · TK1151

Mitochondrion0.027

Rank 4 · TkA08G130720 · TK1151

Endoplasmic reticulum0.023

Rank 5 · TkA08G130720 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00076RRM_132-82 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G130720	`PF00076`	RRM_1	32	82	4.2e-07	30.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q1PEP5`	Arabidopsis thaliana	sp\|Q1PEP5\|NUCL2_ARATH Nucleolin 2	38.300%	Swiss-Prot	Low
`Q6Z1C0`	Oryza sativa subsp. japonica	sp\|Q6Z1C0\|NUCL1_ORYSJ Nucleolin 1	41.600%	Swiss-Prot	Low
`Q7XTT4`	Oryza sativa subsp. japonica	sp\|Q7XTT4\|NUCL2_ORYSJ Nucleolin 2	47.800%	Swiss-Prot	Low

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