TkA08G109250 | RubberDandelionOmics

Gene overview

TkA08G109250

Reference: TK1151 Chr: Chr08 Coordinates: 28403475-28404332 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

813 bp · TkA08G109250|TK1151|cDNA

ATGCAGGATATTCATTCGTTTGAGAGCACCGGTGTAGGAGGTGGCTTGTTCGCCGGAGTCGGAGGAGGAGGAGGAGGAGATAGACGGTTGCGGCACCACCACCAGGACCTGAAGTGTCCACGTTGCGATTCTTCAAACACAAAATTCTGTTACTACAACAACTACAATCTTTCTCAGCCACGCCACTTCTGCAAAAGCTGCCGGCGATACTGGACAAAAGGTGGCGTACTCCGCAACGTTCCCGTCGGTGGCGGCATCCG...

CDS

Download CDS FASTA

813 bp · TkA08G109250|TK1151|CDS

ATGCAGGATATTCATTCGTTTGAGAGCACCGGTGTAGGAGGTGGCTTGTTCGCCGGAGTCGGAGGAGGAGGAGGAGGAGATAGACGGTTGCGGCACCACCACCAGGACCTGAAGTGTCCACGTTGCGATTCTTCAAACACAAAATTCTGTTACTACAACAACTACAATCTTTCTCAGCCACGCCACTTCTGCAAAAGCTGCCGGCGATACTGGACAAAAGGTGGCGTACTCCGCAACGTTCCCGTCGGTGGCGGCATCCG...

Protein

Download Protein FASTA

270 aa · TkA08G109250|TK1151|PROTEIN

MQDIHSFESTGVGGGLFAGVGGGGGGDRRLRHHHQDLKCPRCDSSNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGIRKRKSSNSENSSSDSSSLTATTTTRNTTATTTPTDISGSNSTNSTPSMMINFNESSRRFFNIPQSSTLNQSSAGNATSEIGVFSGVMTSSTDQFSGIPSFQLEERNTEQVVENDNGYQIQWKVETTGFMDQTAELNDGGVAGTEDWQDSRDEGLFDLIGNVDQSYWNQNHWNDD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G109250`
TK1151 ID	TkA08G109250
OH-1004 ID	LXL04_031481
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	90.200
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA08G109250

Location Chr08:28403475-28404332 (-)

Description Similar to DOF5.4: Dof zinc finger protein DOF5.4

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g60850`	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.	No verified direct reference in this release
`At3g21270`	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.	No verified direct reference in this release
`At1g51700`	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.	No verified direct reference in this release
`At3g45610`	Transcription factor that negatively affects seed germination and opposes TCP14 function in the regulation of a specific set of abscisic acid-related genes.	Arabidopsis thaliana DOF6 negatively affects germination in non-after-ripened seeds and interacts with TCP14.2012 · DOI: 10.1093/jxb/err388 Mobile PEAR transcription factors integrate positional cues to prime cambial growth.2019 · DOI: 10.1038/s41586-018-0839-y

Rice

Reference gene ID	Possible function	Papers / DOI
`Os02g0726300`	Transcription factor that may transactivate seed storage protein genes in developing seeds.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_031481 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0010052 guard cell differentiation Biological Process

GO:0010118 stomatal movement Biological Process

GO:0045893 positive regulation of DNA-templated transcription Biological Process

GO:1902066 regulation of cell wall pectin metabolic process Biological Process

GO:0005634 nucleus Cellular Component

GO:0000976 transcription cis-regulatory region binding Molecular Function

GO:0003677 DNA binding Molecular Function

GO:0003700 DNA-binding transcription factor activity Molecular Function

GO:0008270 zinc ion binding Molecular Function

GO:0043565 sequence-specific DNA binding Molecular Function

KEGG gene cross-reference

ath:AT1G51700

ath:AT5G60850

ath:AT5G65590

dosa:Os02g0726300

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.971

Rank 1 · TkA08G109250 · TK1151

Cytoplasm0.110

Rank 2 · TkA08G109250 · TK1151

Cell membrane0.020

Rank 3 · TkA08G109250 · TK1151

Endoplasmic reticulum0.013

Rank 4 · TkA08G109250 · TK1151

Plastid0.009

Rank 5 · TkA08G109250 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF23451Zn_ribbon_PaaD29-68 aa

PF14369Zn_ribbon_1930-44 aa

PF02701Zn_ribbon_Dof35-91 aa

PF27208TP_021438-69 aa

PF14369Zn_ribbon_1961-72 aa

PF25739HCMV_UL15A80-125 aa

PF29052PGA28-like_dom90-170 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G109250	`PF23451`	Zn_ribbon_PaaD	29	68	0.0013	19.1
TkA08G109250	`PF14369`	Zn_ribbon_19	30	44	4.5	8.2
TkA08G109250	`PF02701`	Zn_ribbon_Dof	35	91	6.6e-34	116.6
TkA08G109250	`PF27208`	TP_0214	38	69	0.25	11.8
TkA08G109250	`PF14369`	Zn_ribbon_19	61	72	4.5	8.2
TkA08G109250	`PF25739`	HCMV_UL15A	80	125	0.84	10.8
TkA08G109250	`PF29052`	PGA28-like_dom	90	170	0.093	13.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8LDR0`	Arabidopsis thaliana	sp\|Q8LDR0\|DOF54_ARATH Dof zinc finger protein DOF5.4	43.200%	Swiss-Prot	Medium
`Q94AR6`	Arabidopsis thaliana	sp\|Q94AR6\|DOF31_ARATH Dof zinc finger protein DOF3.1	90.700%	Swiss-Prot	Low
`O82155`	Arabidopsis thaliana	sp\|O82155\|DOF17_ARATH Dof zinc finger protein DOF1.7	87.000%	Swiss-Prot	Low
`Q9M1E6`	Arabidopsis thaliana	sp\|Q9M1E6\|DOF32_ARATH Dof zinc finger protein DOF3.2	78.000%	Swiss-Prot	Low
`Q6Z345`	Oryza sativa subsp. japonica	sp\|Q6Z345\|DOF4_ORYSJ Dof zinc finger protein 4	89.300%	Swiss-Prot	Low

JBrowse

View in Genome Browser

Gene Card