TkA08G107780 | RubberDandelionOmics

Gene overview

TkA08G107780

Reference: TK1151 Chr: Chr08 Coordinates: 28041131-28044966 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2243 bp · TkA08G107780|TK1151|cDNA

AAAAATCACACTAGTACACACATTAAAGATTCATTACCCAACTATGAAAACATGTGAAATGAACTGACAAACGAACAGCTCATCTCTCACCCCCAATTCGAAGAAAGTAGCTTAAAAGTTGCAAACGGGTGTTGATTTAGCACTAACCCAAGCAGATTCACAACAACCGCCTATGAATTTCAGACTAAAAAGCGGGTGTAGTTGAGCTGTTGAGCTACTTCTTCCACTGGAATCTATAATCGTTTTCAGGCGGAGCTAGA...

CDS

Download CDS FASTA

1617 bp · TkA08G107780|TK1151|CDS

ATGGAGTTTTCCGCATCACTGTTTCTATTTCTAGCATCAATTTCTGCAATTTCGGCACAATATGTTCAAAAGTCAGAACTTGTAATCAACGGGACTTTACCAATATCTCATACGGATCCAAATTATATCTGTGCTACAATCGACTGGTGGCCTGATGACAAGTGTAACTACGATCATTGCCCATGGGGGTCGTCATCTGCTCTAAATCTGGATTTATCCAATCCGATTCTTACAAAAGCAGTCCAAGCATTTGAACATCT...

Protein

Download Protein FASTA

538 aa · TkA08G107780|TK1151|PROTEIN

MEFSASLFLFLASISAISAQYVQKSELVINGTLPISHTDPNYICATIDWWPDDKCNYDHCPWGSSSALNLDLSNPILTKAVQAFEHLRIRVGGSLQDQVVYDVGGISGPCHPFIKSKWELFGFSRGCLRMNRWDELNRFFFKTGALVTFGLNALKGRHQIKKGVWGGDWNSSNAHDFIKYTISKGYHIHSWEFGNELSGNGIGAMVHVEQYGFDLIELRGIIDNLYREIEPKPLLVAPGGFFDKQWFAKLLKISGSQIVN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G107780`
TK1151 ID	TkA08G107780
OH-1004 ID	LXL04_031455
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.600
Protein coverage (%)	TK1151 99.442 / OH-1004 96.223 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA08G107780

Location Chr08:28041131-28044966 (+)

Description Similar to At5g07830: Heparanase-like protein 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g07830`	Endoglycosidase which is a cell surface and extracellular matrix-degrading enzyme.	No verified direct reference in this release
`At5g61250`	Endoglycosidase which is a cell surface and extracellular matrix-degrading enzyme.	No verified direct reference in this release
`At5g34940`	Endoglycosidase which is a cell surface and extracellular matrix-degrading enzyme.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_031455 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009826 unidimensional cell growth Biological Process

GO:0030214 hyaluronan catabolic process Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005615 extracellular space Cellular Component

GO:0005765 lysosomal membrane Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0016020 membrane Cellular Component

GO:0031012 extracellular matrix Cellular Component

GO:0004566 beta-glucuronidase activity Molecular Function

GO:0016740 transferase activity Molecular Function

GO:0033906 hyaluronoglucuronidase activity Molecular Function

KEGG gene cross-reference

ag:BAA97804

ath:AT5G07830

ath:AT5G34940

ath:AT5G61250

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.282

Rank 1 · TkA08G107780 · TK1151

Extracellular0.251

Rank 2 · TkA08G107780 · TK1151

Cell membrane0.160

Rank 3 · TkA08G107780 · TK1151

Cytoplasm0.130

Rank 4 · TkA08G107780 · TK1151

Endoplasmic reticulum0.112

Rank 5 · TkA08G107780 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03662Glyco_hydro_79n26-340 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G107780	`PF03662`	Glyco_hydro_79n	26	340	1.2e-153	511.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FF10`	Arabidopsis thaliana	sp\|Q9FF10\|HPSE1_ARATH Heparanase-like protein 1	59.300%	Swiss-Prot	High
`Q8L608`	Arabidopsis thaliana	sp\|Q8L608\|HPSE2_ARATH Heparanase-like protein 2	58.000%	Swiss-Prot	High
`Q9FZP1`	Arabidopsis thaliana	sp\|Q9FZP1\|HPSE3_ARATH Heparanase-like protein 3	45.100%	Swiss-Prot	Medium

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