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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G103460
Reference: TK1151 Chr: Chr08 Coordinates: 26829934-26832625 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1707 bp · TkA08G103460|TK1151|cDNA

ATACATTATAAGATCCGCAGGGTGGGGGACTATGTCTCTGTTTATATATAAAACGACATCACTGCCCATCCACACTCTCTCATCCAACCAAAAGGAATCCCACCTCTCAACTCTTCTTCCTCCATATTTTCAACTCCTTCCATTTCTGCCACAATCTCCATCTTTGTACCTTCAAATCCTGCTTCCTTTTTCACCAATTCCTGTTAATCTCCCTTTGATCCGTTTCTGGCTTCACGGCGGCGTGTTTTGGCTGTGATGGG...

CDS

Download CDS FASTA

927 bp · TkA08G103460|TK1151|CDS

ATGGCAGCTCGAAGCTTTCTCTACGGTGGTGCTTCCGGTGGCGATGTCGGCGGTGGCGGCTCTGTTTTGCTGACAAACAAAAGGGTTCATTGTTCTTCTTCTCTTAACCCTGTTGATTCCTTCTTCGTCTCTCAATCGGCTTCTTTCCAGGGTTCTCGTTCAATACTTAGCTTTGAAGATAGAGGGAAGGGATCCGTGGGCCAAATTTTCCAGCCATTTGATCATGACGACAACGGAGATGATGAATACGATGAATACTT...

Protein

Download Protein FASTA

308 aa · TkA08G103460|TK1151|PROTEIN

MAARSFLYGGASGGDVGGGGSVLLTNKRVHCSSSLNPVDSFFVSQSASFQGSRSILSFEDRGKGSVGQIFQPFDHDDNGDDEYDEYFHQPEKKRRLTADQVRFLEKSFESDNKLEPERKIQLAKELGLQPRQVAIWFQNRRARWKTKQLEKDYDDLQESYNKLKANFENLVKEKEKLKSEVDELSDKLMIQEKGTSDSSSTKSPSEPQLCQPIPDCGYEEDLSKNMDPAYKPEGNLDVVFEGGDSSYIFEQEQSDVSLDE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA08G103460
TK1151 IDTkA08G103460
OH-1004 IDLXL04_031371
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G103460
LocationChr08:26829934-26832625 (+)
DescriptionSimilar to HAT5: Homeobox-leucine zipper protein HAT5
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g01470 Probable transcription activator involved in leaf development.
Ectopic expression of the Arabidopsis transcriptional activator Athb-1 alters leaf cell fate in tobacco.1995 · DOI: 10.1105/tpc.7.11.1773
At1g69780 Probable transcription factor that may act in the sucrose-signaling pathway. No verified direct reference in this release
At5g15150 Probable transcription factor. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os02g0729700 Probable transcription factor. No verified direct reference in this release
UniProt: A2X980 Probable transcription factor. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_031371 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006351 DNA-templated transcription Biological Process
GO:0009637 response to blue light Biological Process
GO:0009651 response to salt stress Biological Process
GO:0009965 leaf morphogenesis Biological Process
GO:0017148 negative regulation of translation Biological Process
GO:0045893 positive regulation of DNA-templated transcription Biological Process
GO:0005634 nucleus Cellular Component
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific Molecular Function
GO:0003700 DNA-binding transcription factor activity Molecular Function
GO:0042802 identical protein binding Molecular Function
GO:0042803 protein homodimerization activity Molecular Function
GO:0043565 sequence-specific DNA binding Molecular Function
KEGG gene cross-reference
ath:AT3G01470
dosa:Os02g0729700
dosa:Os08g0416000
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.979
Rank 1 · TkA08G103460 · TK1151
Cytoplasm0.086
Rank 2 · TkA08G103460 · TK1151
Cell membrane0.022
Rank 3 · TkA08G103460 · TK1151
Endoplasmic reticulum0.014
Rank 4 · TkA08G103460 · TK1151
Plastid0.012
Rank 5 · TkA08G103460 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF24133DUF740084-105 aa
PF24850CC_BshC91-121 aa
PF00046Homeodomain92-145 aa
PF24655DUF764594-148 aa
PF01496V_ATPase_I97-196 aa
PF12709Fungal_TACC100-111 aa
PF20492ERM_helical104-119 aa
PF21074GDH_C107-180 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G103460PF24133DUF7400841050.1511.8
TkA08G103460PF24850CC_BshC911211.99.1
TkA08G103460PF00046Homeodomain921455e-1865.4
TkA08G103460PF24655DUF7645941480.1512.7
TkA08G103460PF01496V_ATPase_I971960.1410.8
TkA08G103460PF12709Fungal_TACC1001111.79.9
TkA08G103460PF20492ERM_helical1041190.01615.9
TkA08G103460PF21074GDH_C1071800.008816.0
TkA08G103460PF23177bHLH_IRO31111800.8110.8
TkA08G103460PF05920Homeobox_KN1161433.6e-0524.2
TkA08G103460PF25078DUF78011171900.2912.0
TkA08G103460PF30816CEP152_CC11331920.03413.2
TkA08G103460PF03961FapA1341870.999.7
TkA08G103460PF20492ERM_helical1381880.01615.9
TkA08G103460PF28280SsaO1381780.05614.5
TkA08G103460PF28231STB2_C1381850.05814.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q02283Arabidopsis thalianasp|Q02283|HAT5_ARATH Homeobox-leucine zipper protein HAT575.800%Swiss-ProtLow
Q8LC03Arabidopsis thalianasp|Q8LC03|ATB13_ARATH Homeobox-leucine zipper protein ATHB-1370.400%Swiss-ProtLow
Q00466Arabidopsis thalianasp|Q00466|HAT7_ARATH Homeobox-leucine zipper protein HAT777.100%Swiss-ProtLow
Q6YWR4Oryza sativa subsp. japonicasp|Q6YWR4|HOX16_ORYSJ Homeobox-leucine zipper protein HOX1648.000%Swiss-ProtLow
A2X980Oryza sativa subsp. indicasp|A2X980|HOX16_ORYSI Homeobox-leucine zipper protein HOX1658.300%Swiss-ProtLow

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