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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G100660
Reference: TK1151 Chr: Chr08 Coordinates: 26097745-26098477 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

589 bp · TkA08G100660|TK1151|cDNA

GGATTCCCGCCAATCCAGCAACATGGGTTGAGCGATCCGCCGGCGACTGATTCGAAGATGAAAGCATACCAGTAGCTTGGCAACTGAAGAAATGAATGCATTAAGAAAGCAGGCGTCGAATCTCGGAAAACAGACCGGTCTCAAGGAATTTACAGGAAAAGACCGCGTAACAGACGCTGTTCGTGCTCTGGCCAACTTCTACGCTGCACAGCTCTCACTATGCTCCAAACAAATCCCAACCTCGTATTCCAATGTCCGAA...

CDS

Download CDS FASTA

498 bp · TkA08G100660|TK1151|CDS

ATGAATGCATTAAGAAAGCAGGCGTCGAATCTCGGAAAACAGACCGGTCTCAAGGAATTTACAGGAAAAGACCGCGTAACAGACGCTGTTCGTGCTCTGGCCAACTTCTACGCTGCACAGCTCTCACTATGCTCCAAACAAATCCCAACCTCGTATTCCAATGTCCGAATGATTCATGCCCACATGATCGTTTCTGGGTTCAGGCCCAAGTCTCACATCCTCAACCGCTTAATGGACTTATACACCAAATCGTCCAACCT...

Protein

Download Protein FASTA

166 aa · TkA08G100660|TK1151|PROTEIN

MNALRKQASNLGKQTGLKEFTGKDRVTDAVRALANFYAAQLSLCSKQIPTSYSNVRMIHAHMIVSGFRPKSHILNRLMDLYTKSSNLPYARQLFDEIPEPDICARTTFITAYSASGDLKLAREIFNNTPLNIRDTVSYNAMITGCAHNNDGNAAFDLFRDMKRYNF

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G100660
TK1151 IDTkA08G100660
OH-1004 IDLXL04_031299
Relationship / confidenceSequence Supported Annotation Or Model Conflict / Review
Protein identity (%)98.200
Protein coverage (%)TK1151 100.000 / OH-1004 20.244
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G100660
LocationChr08:26097745-26098477 (+)
DescriptionSimilar to PCMP-H74: Pentatricopeptide repeat-containing protein At1g25360
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g25360 Pentatricopeptide repeat-containing protein At1g25360. No verified direct reference in this release
At3g02330 Involved in C-to-U editing of mitochondrial RNA.
MEF13 Requires MORF3 and MORF8 for RNA Editing at Eight Targets in Mitochondrial mRNAs in Arabidopsis thaliana.2015 · DOI: 10.1016/j.molp.2015.05.008
At4g31070 Pentatricopeptide repeat-containing protein At4g31070, mitochondrial. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_031299 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009451 RNA modification Biological Process
GO:0010214 seed coat development Biological Process
GO:0140547 acquisition of seed longevity Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT1G25360
ath:AT2G22070
ath:AT4G02750
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.720
Rank 1 · TkA08G100660 · TK1151
Plastid0.146
Rank 2 · TkA08G100660 · TK1151
Nucleus0.038
Rank 3 · TkA08G100660 · TK1151
Cytoplasm0.031
Rank 4 · TkA08G100660 · TK1151
Cell membrane0.006
Rank 5 · TkA08G100660 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF17177PPR_long25-103 aa
PF14559TPR_1928-39 aa
PF17049AEP158-112 aa
PF13812PPR_365-98 aa
PF13041PPR_269-97 aa
PF14559TPR_1973-100 aa
PF01535PPR75-98 aa
PF14559TPR_1989-138 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G100660PF17177PPR_long251030.0006719.8
TkA08G100660PF14559TPR_1928390.03815.0
TkA08G100660PF17049AEP1581120.01515.1
TkA08G100660PF13812PPR_365982.7e-0628.1
TkA08G100660PF13041PPR_269971.5e-1661.0
TkA08G100660PF14559TPR_19731000.03815.0
TkA08G100660PF01535PPR75982.7e-1556.2
TkA08G100660PF14559TPR_19891380.03815.0
TkA08G100660PF12854PPR_190967.3e-0626.3
TkA08G100660PF13812PPR_3991262.7e-0628.1
TkA08G100660PF13041PPR_21001261.5e-1661.0
TkA08G100660PF12854PPR_11001267.3e-0626.3
TkA08G100660PF01535PPR1061262.7e-1556.2
TkA08G100660PF13041PPR_21331651.5e-1661.0
TkA08G100660PF13812PPR_31341632.7e-0628.1
TkA08G100660PF12854PPR_11341627.3e-0626.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9FRI5Arabidopsis thalianasp|Q9FRI5|PPR57_ARATH Pentatricopeptide repeat-containing protein At1g2536057.600%Swiss-ProtHigh
Q9FWA6Arabidopsis thalianasp|Q9FWA6|PP207_ARATH Pentatricopeptide repeat-containing protein At3g02330, mitochondrial44.700%Swiss-ProtLow
O65543Arabidopsis thalianasp|O65543|PP343_ARATH Pentatricopeptide repeat-containing protein At4g31070, mitochondrial30.000%Swiss-ProtMedium

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