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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G097700
Reference: TK1151 Chr: Chr08 Coordinates: 25274031-25274783 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

723 bp · TkA08G097700|TK1151|cDNA

ATGGCCAACATATTATATAGAGTTGGTGTTTACAACATACTTGAGAATGCCCAGAAAGTTTGCAGTAGTTGGCATAAAATCTGCAAGGACCCTGCCATGTGGCGGGTCATTAATATGAACACCATGTTCGATGGTAAAATTAGAATGTTGCGGAAGATGTGTAAGCATGCTGTTGATCGAAGCCAAGGCCAATTACTTGATATCACCATTCGTGGTCGTGCCGCCAATGAGGAGCTTCTGTATTATATCGCTAATAGGTC...

CDS

Download CDS FASTA

723 bp · TkA08G097700|TK1151|CDS

ATGGCCAACATATTATATAGAGTTGGTGTTTACAACATACTTGAGAATGCCCAGAAAGTTTGCAGTAGTTGGCATAAAATCTGCAAGGACCCTGCCATGTGGCGGGTCATTAATATGAACACCATGTTCGATGGTAAAATTAGAATGTTGCGGAAGATGTGTAAGCATGCTGTTGATCGAAGCCAAGGCCAATTACTTGATATCACCATTCGTGGTCGTGCCGCCAATGAGGAGCTTCTGTATTATATCGCTAATAGGTC...

Protein

Download Protein FASTA

240 aa · TkA08G097700|TK1151|PROTEIN

MANILYRVGVYNILENAQKVCSSWHKICKDPAMWRVINMNTMFDGKIRMLRKMCKHAVDRSQGQLLDITIRGRAANEELLYYIANRSSQLRRLEIAYCFYKEPKMLAKCLEKFPLLEELSLYRIYFSSEITEIARRCCPKLTTLKINGEMSWRGYDGVAFSIGKNLPELRHLELIGNHISNRGLQAIVDGCRHLELLDLRQCCSLKLNGEFGKKCLEKIKCVKLPMESHEGCPYIGGHGH

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G097700
TK1151 IDTkA08G097700
OH-1004 IDLXL04_027567
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)40.600
Protein coverage (%)TK1151 97.500 / OH-1004 77.961
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G097700
LocationChr08:25274031-25274783 (-)
DescriptionSimilar to SKIP19: F-box protein SKIP19
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g05500 Putative F-box/LRR-repeat protein 23. No verified direct reference in this release
At4g05460 Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. No verified direct reference in this release
At4g05475 Putative F-box protein At4g05475. No verified direct reference in this release
At4g05470 Putative F-box/LRR-repeat protein 21. No verified direct reference in this release
At4g05490 Putative F-box/LRR-repeat protein 22. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_027567 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006511 ubiquitin-dependent protein catabolic process Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:1905761 SCF ubiquitin ligase complex binding Molecular Function
KEGG gene cross-reference
ath:AT4G05460
ath:AT4G05475
ath:AT4G05497
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.582
Rank 1 · TkA08G097700 · TK1151
Cytoplasm0.501
Rank 2 · TkA08G097700 · TK1151
Endoplasmic reticulum0.057
Rank 3 · TkA08G097700 · TK1151
Cell membrane0.044
Rank 4 · TkA08G097700 · TK1151
Plastid0.033
Rank 5 · TkA08G097700 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00646F-box3-35 aa
PF12937F-box-like16-37 aa
PF29594LRR_SKP265-148 aa
PF23622LRR_At1g61320_AtMIF176-150 aa
PF24758LRR_At5g5637085-149 aa
PF13516LRR_690-98 aa
PF00646F-box104-117 aa
PF12799LRR_4110-123 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G097700PF00646F-box3350.2212.2
TkA08G097700PF12937F-box-like16370.0006120.2
TkA08G097700PF29594LRR_SKP2651480.0001821.6
TkA08G097700PF23622LRR_At1g61320_AtMIF1761500.6410.1
TkA08G097700PF24758LRR_At5g56370851499.5e-1245.8
TkA08G097700PF13516LRR_690980.0001122.7
TkA08G097700PF00646F-box1041170.2212.2
TkA08G097700PF12799LRR_41101230.0009920.0
TkA08G097700PF13855LRR_81161470.05214.0
TkA08G097700PF12799LRR_41251480.0009920.0
TkA08G097700PF25372LRR_FBXL151262060.00416.3
TkA08G097700PF29594LRR_SKP21302020.0001821.6
TkA08G097700PF13516LRR_61381470.0001122.7
TkA08G097700PF24758LRR_At5g563701632039.5e-1245.8
TkA08G097700PF13855LRR_81642010.05214.0
TkA08G097700PF23622LRR_At1g61320_AtMIF11662050.6410.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9S9V9Arabidopsis thalianasp|Q9S9V9|FBL23_ARATH Putative F-box/LRR-repeat protein 2345.500%Swiss-ProtMedium
Q9M0U9Arabidopsis thalianasp|Q9M0U9|SKI19_ARATH F-box protein SKIP1944.900%Swiss-ProtMedium
Q9M0U7Arabidopsis thalianasp|Q9M0U7|FB221_ARATH Putative F-box protein At4g0547539.400%Swiss-ProtMedium
Q9M0U8Arabidopsis thalianasp|Q9M0U8|FBL21_ARATH Putative F-box/LRR-repeat protein 2138.100%Swiss-ProtMedium
Q9M0U6Arabidopsis thalianasp|Q9M0U6|FBL22_ARATH Putative F-box/LRR-repeat protein 2240.300%Swiss-ProtMedium

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