TkA08G088520 | RubberDandelionOmics

Gene overview

TkA08G088520

Reference: TK1151 Chr: Chr08 Coordinates: 22915785-22918965 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2030 bp · TkA08G088520|TK1151|cDNA

GTAGAAACGAAAAGAGTAGAAAACGCATCCGGTCGTTGGCAAATTGAGACACGTCGATTCCGCATATAAAAGGCAATTCGCTAAAACCCTCCAAATCTACGCGCACCCGGCCAGATCTTTATCGATCAACCGATCCATCCATGGGCATCAACAACTGTTTTAGGGCTTCTTTCGACCTTTAATTCCATCAAACACTTGTTTCTTTCCCCCTGCATCTCTGCCTAACTCATTGATTCTACATTCCCCGACAGCCGTTTCTT...

CDS

Download CDS FASTA

1071 bp · TkA08G088520|TK1151|CDS

ATGAGGAAGAAGAGAAAAGGCAGTGACCTAATATGCACTGACAATAAAAAGAAAATCGTGGAATCAACCGGTGATTCAGAGTCTCTGATATCAAATCTCAAGTCTCATTACTCTCTAGAAGATTACGTTAGATTGAAAAAAAGGTGCTGTAAGGAAGATGTGATCTGCGGTGGTGGTGATTCCAGTGGATCGTGTAAGAACAGGCTTGCTGGTATTGCTGCAACTGCTCCCCCTTGTGCAACCTCGTCACTGGTTTTATC...

Protein

Download Protein FASTA

356 aa · TkA08G088520|TK1151|PROTEIN

MRKKRKGSDLICTDNKKKIVESTGDSESLISNLKSHYSLEDYVRLKKRCCKEDVICGGGDSSGSCKNRLAGIAATAPPCATSSLVLSGRGIKRKIGCIDVATQMGRKNKIAEDYVKGATIGKGKFGSVWLCRCRVSGVEFACKTLVKGEETVHREVEIMQHLSGHPGVVTLKAVYEDSESFHLVMELCSGGRLIDQMTKEGRYSEQRAANIFKELMMVIKYCHDMGVVHRDVKPENILLTASGKIKLADFGLAVRITNGQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G088520`
TK1151 ID	TkA08G088520
OH-1004 ID	LXL04_031130
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 96.629 / OH-1004 72.421 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA08G088520

Location Chr08:22915785-22918965 (-)

Description Similar to PEPKR2: Serine/threonine-protein kinase PEPKR2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g12680`	Serine/threonine-protein kinase PEPKR2.	No verified direct reference in this release
`At4g23650`	May play a role in signal transduction pathways that involve calcium as a second messenger.	CDPKs CPK6 and CPK3 function in ABA regulation of guard cell S-type anion- and Ca(2+)-permeable channels and stomatal closure.2006 · DOI: 10.1371/journal.pbio.0040327
`At4g04700`	May play a role in signal transduction pathways that involve calcium as a second messenger.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os05g0491900`	May play a role in signal transduction pathways that involve calcium as a second messenger.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_031130 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0035556 intracellular signal transduction Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0016020 membrane Cellular Component

GO:0004683 calcium/calmodulin-dependent protein kinase activity Molecular Function

GO:0005509 calcium ion binding Molecular Function

GO:0005516 calmodulin binding Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0009931 calcium-dependent protein serine/threonine kinase activity Molecular Function

GO:0106310 protein serine kinase activity Molecular Function

KEGG gene cross-reference

ath:AT1G12680

ath:AT1G50700

ath:AT1G76040

dosa:Os03g0788500

gmx:547825

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.731

Rank 1 · TkA08G088520 · TK1151

Cytoplasm0.320

Rank 2 · TkA08G088520 · TK1151

Cell membrane0.045

Rank 3 · TkA08G088520 · TK1151

Mitochondrion0.037

Rank 4 · TkA08G088520 · TK1151

Endoplasmic reticulum0.029

Rank 5 · TkA08G088520 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14531Kinase-like110-161 aa

PF00069Pkinase114-344 aa

PF07714PK_Tyr_Ser-Thr118-317 aa

PF06293Kdo149-257 aa

PF01636APH149-191 aa

PF01163RIO1151-262 aa

PF03109ABC1174-258 aa

PF12330Haspin_kinase177-253 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G088520	`PF14531`	Kinase-like	110	161	6.6e-05	23.0
TkA08G088520	`PF00069`	Pkinase	114	344	1.4e-62	212.2
TkA08G088520	`PF07714`	PK_Tyr_Ser-Thr	118	317	3.2e-32	112.6
TkA08G088520	`PF06293`	Kdo	149	257	0.00014	22.1
TkA08G088520	`PF01636`	APH	149	191	0.0015	19.1
TkA08G088520	`PF01163`	RIO1	151	262	0.00015	22.2
TkA08G088520	`PF03109`	ABC1	174	258	6.5e-07	29.5
TkA08G088520	`PF12330`	Haspin_kinase	177	253	0.041	13.6
TkA08G088520	`PF14531`	Kinase-like	214	307	6.6e-05	23.0
TkA08G088520	`PF17667`	Pkinase_fungal	224	279	0.064	12.7
TkA08G088520	`PF01636`	APH	225	253	0.0015	19.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q8W490`	Arabidopsis thaliana	sp\|Q8W490\|PEPK2_ARATH Serine/threonine-protein kinase PEPKR2	71.500%	Swiss-Prot	High
`Q42479`	Arabidopsis thaliana	sp\|Q42479\|CDPK3_ARATH Calcium-dependent protein kinase 3	40.600%	Swiss-Prot	Medium
`Q9ZSA4`	Arabidopsis thaliana	sp\|Q9ZSA4\|CDPKR_ARATH Calcium-dependent protein kinase 27	42.500%	Swiss-Prot	Medium
`B9FKW9`	Oryza sativa subsp. japonica	sp\|B9FKW9\|CDPKE_ORYSJ Calcium-dependent protein kinase 14	42.600%	Swiss-Prot	Medium

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