Gene Card
Gene overview
cDNA / CDS / Protein Sequences
2328 bp · TkA08G086220|TK1151|cDNA
AGCAGAGCTGCAAGCTTCTTCTCTGGGTTTGTAATTGCCAACAATGGAGCTGAGTTTGATCCGACATTTCTATAAATTTGCAAGCGATGGATCTTTCACTTCATCAAATCTTTGATTCCACCCTCTGTGTTTCTGAAGAATTCGAGCTAATCACAAAGATCACTGGCGATGAATTGATGGATTAATTTCAAGAAAAAAAATCATGGATTCATTGAACGCTATACTCGATATGTCGAAAGAGGAGCTTGAAGCATTTTTAA...
1815 bp · TkA08G086220|TK1151|CDS
ATGGATTCATTGAACGCTATACTCGATATGTCGAAAGAGGAGCTTGAAGCATTTTTAAATGATCCAAATAGCGATACCACAAATGTTCGGGGTCTAGTCAAACTCCTTTCTGAAATCATACATACTTTCATTCTTACTGCTATCATAAAGATCACTCAAAAAGGGTACACCGACGAAGAAGCTAAGCACGCGATTTTACGATGTGGTCCTTTCCATAGCACCGAAGGGAACCAGCTGGAGTCAACTTTCGTTGAACGTGC...
Protein
Download Protein FASTA604 aa · TkA08G086220|TK1151|PROTEIN
MDSLNAILDMSKEELEAFLNDPNSDTTNVRGLVKLLSEIIHTFILTAIIKITQKGYTDEEAKHAILRCGPFHSTEGNQLESTFVERALISLESNKKDDDSSNYAFQDINELVDFMILEMVTTVRDMKPAVTSPISVTEAVWSLLMCDLDVRQASSQSESKNKKALASDCEIRAHLKMKTCSQNSKSGKETEDACDCECKKWCAMATSKRDAALRQKVVQIFEKKYKGRGKGMKKKFSSLKDLCLDDKQSPSSSSEQNKNI...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA08G086220 |
|---|---|
| TK1151 ID | TkA08G086220 |
| OH-1004 ID | LXL04_018847 |
| Relationship / confidence | Multi Source To Oh1004 / Complex relationship |
| Protein identity (%) | 99.200 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA08G086220 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr08:22268123-22272932 (+) | |||||||||
| Description | Similar to RF298: Putative E3 ubiquitin-protein ligase RF298 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0016567 protein ubiquitination Biological Process GO:0005634 nucleus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0008270 zinc ion binding Molecular Function GO:0061630 ubiquitin protein ligase activity Molecular Function | |||||||||
| KEGG gene cross-reference | ath:AT1G03365 ath:AT1G32530 ath:AT4G03000 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF24751DUF76966-23 aaPF20235PIR2-like_helical40-154 aaPF24751DUF7696168-178 aaPF14447Prok-RING_4173-185 aaPF13639zf-RING_2188-202 aaPF24751DUF7696195-220 aaPF13920zf-C3HC4_3549-595 aaPF13639zf-RING_2550-590 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA08G086220 | PF24751 | DUF7696 | 6 | 23 | 0.024 | 15.5 |
| TkA08G086220 | PF20235 | PIR2-like_helical | 40 | 154 | 0.0036 | 18.2 |
| TkA08G086220 | PF24751 | DUF7696 | 168 | 178 | 0.024 | 15.5 |
| TkA08G086220 | PF14447 | Prok-RING_4 | 173 | 185 | 0.0017 | 18.9 |
| TkA08G086220 | PF13639 | zf-RING_2 | 188 | 202 | 0.00028 | 21.8 |
| TkA08G086220 | PF24751 | DUF7696 | 195 | 220 | 0.024 | 15.5 |
| TkA08G086220 | PF13920 | zf-C3HC4_3 | 549 | 595 | 1.9e-12 | 47.5 |
| TkA08G086220 | PF13639 | zf-RING_2 | 550 | 590 | 0.00028 | 21.8 |
| TkA08G086220 | PF13923 | zf-C3HC4_2 | 550 | 589 | 0.075 | 13.6 |
| TkA08G086220 | PF14634 | zf-RING_5 | 550 | 591 | 0.085 | 13.6 |
| TkA08G086220 | PF14447 | Prok-RING_4 | 551 | 594 | 0.0017 | 18.9 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.