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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G080610
Reference: TK1151 Chr: Chr08 Coordinates: 20718110-20719980 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1716 bp · TkA08G080610|TK1151|cDNA

CTCGATCACCCTATAAATTCACCCACAATCCTCTCCTAAACCTCGCATCACATCATCAATTCTGTTTTCGTACTCATCAACTCACCATGGTTGCTCGAAAACTCGCCTTAGGTCTCTTCCTCTGCCTCCTCGGCACCACCGCTCTTGCCACTACACGCTCGCCACGACTCGGCGGCCCTGAGTTCTGCAACCTCCAGCGACTCTCCGCTACCCAGCCTTCTCAACGCCTTGAGTTCGAAGGTGGTTCAATTGAAACATGG...

CDS

Download CDS FASTA

1443 bp · TkA08G080610|TK1151|CDS

ATGGTTGCTCGAAAACTCGCCTTAGGTCTCTTCCTCTGCCTCCTCGGCACCACCGCTCTTGCCACTACACGCTCGCCACGACTCGGCGGCCCTGAGTTCTGCAACCTCCAGCGACTCTCCGCTACCCAGCCTTCTCAACGCCTTGAGTTCGAAGGTGGTTCAATTGAAACATGGGATGTAAATGACGACCAATTTCAGTGCGTCGGAGTTGCTCCGATGAGGAAGACTATCCAACCCAACTCTCTTTCTCTTCCAAGCTT...

Protein

Download Protein FASTA

480 aa · TkA08G080610|TK1151|PROTEIN

MVARKLALGLFLCLLGTTALATTRSPRLGGPEFCNLQRLSATQPSQRLEFEGGSIETWDVNDDQFQCVGVAPMRKTIQPNSLSLPSFHPFPRIVFIEEGEGIIGVHFPGCAETFDTGVTGEQQLERPRRMGQQGQEELQGADSHQKVRRFRRGDIIAIPAGAVHWTYNDGNQEVVAISINDINNPSNQLDMQPRSFFLAGGTTSSQSVQGRQRQHLSREQQQQGGSFDFLNIFAGFDTELLAEAFNSNPEIVRSMQQPGN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G080610
TK1151 IDTkA08G080610
OH-1004 IDLXL04_018744
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G080610
LocationChr08:20718110-20719980 (-)
DescriptionSimilar to 11S globulin seed storage protein 2
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_018744 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0010431 seed maturation Biological Process
GO:0048316 seed development Biological Process
GO:0070207 protein homotrimerization Biological Process
GO:0042735 endosperm protein body Cellular Component
GO:0043245 extraorganismal space Cellular Component
GO:0019863 IgE binding Molecular Function
GO:0019864 IgG binding Molecular Function
GO:0045735 nutrient reservoir activity Molecular Function
KEGG gene cross-reference
jre:108996042
sind:105163414
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.455
Rank 1 · TkA08G080610 · TK1151
Extracellular0.253
Rank 2 · TkA08G080610 · TK1151
Endoplasmic reticulum0.204
Rank 3 · TkA08G080610 · TK1151
Cytoplasm0.113
Rank 4 · TkA08G080610 · TK1151
Cell membrane0.046
Rank 5 · TkA08G080610 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00190Cupin_141-199 aa
PF07883Cupin_276-103 aa
PF12852Cupin_6133-171 aa
PF05899Cupin_3144-162 aa
PF07883Cupin_2146-179 aa
PF08007JmjC_2149-180 aa
PF03079ARD151-177 aa
PF00190Cupin_1229-252 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G080610PF00190Cupin_1411992.3e-61206.5
TkA08G080610PF07883Cupin_2761037.2e-0936.0
TkA08G080610PF12852Cupin_61331710.06813.6
TkA08G080610PF05899Cupin_31441620.002218.4
TkA08G080610PF07883Cupin_21461797.2e-0936.0
TkA08G080610PF08007JmjC_21491800.01315.8
TkA08G080610PF03079ARD1511779.8e-0523.3
TkA08G080610PF00190Cupin_12292522.3e-61206.5
TkA08G080610PF00190Cupin_13104572.3e-61206.5
TkA08G080610PF12852Cupin_63404020.06813.6
TkA08G080610PF07883Cupin_23504017.2e-0936.0
TkA08G080610PF03079ARD3544029.8e-0523.3
TkA08G080610PF08007JmjC_23594120.01315.8
TkA08G080610PF05899Cupin_33664100.002218.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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