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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G080110
Reference: TK1151 Chr: Chr08 Coordinates: 20560680-20563732 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1770 bp · TkA08G080110|TK1151|cDNA

ATTAAGTCGCCTTTAACTGTTAAGAGGTTGTATTCAGCCACGCAGTCGTATTTGCACTTATCTCGGCATTCTGCCGCCTCTCGGAGCTCACACAGACTGCGATAAAGATGAGAACGATGGAAGGAATGGCTCTAAAGCTCCCTTCTTTCTCTCAACTCATCAACCCTAACCAACTCATCAATCGCACCTCCCTAAACTTCCGTTTCAATTTCCCCAAATCCTTCTCCACATCTTCTCCAACAGCTTCTCTTTCCGTTCCG...

CDS

Download CDS FASTA

1410 bp · TkA08G080110|TK1151|CDS

ATGAGAACGATGGAAGGAATGGCTCTAAAGCTCCCTTCTTTCTCTCAACTCATCAACCCTAACCAACTCATCAATCGCACCTCCCTAAACTTCCGTTTCAATTTCCCCAAATCCTTCTCCACATCTTCTCCAACAGCTTCTCTTTCCGTTCCGGCGGCCGCACCCGTTTCTCTCGGACACTCCACGCGACCTGATTTTGAAATTCTCCACCAGAAGGTACCCAATGGATCAAAACTCGTTTACTTGGATAATGCTGCAAC...

Protein

Download Protein FASTA

469 aa · TkA08G080110|TK1151|PROTEIN

MRTMEGMALKLPSFSQLINPNQLINRTSLNFRFNFPKSFSTSSPTASLSVPAAAPVSLGHSTRPDFEILHQKVPNGSKLVYLDNAATSQKPSAVIDAVNNYYRSYNSNVHRGIHFLSARATDEYEMARKKVAAFINASQSSEIVFTRNATEAINLVAYSWGISNLKPKDEIVVTVAEHHSAIVPWQLLSKKTGAVLKFVSLTEDEVPDVKMLQETLSNKTKLVVVHHVSNVLASVLPIKEIAEWAHDIGARILVDACQSV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA08G080110
TK1151 IDTkA08G080110
OH-1004 IDLXL04_018729
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)96.800
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G080110
LocationChr08:20560680-20563732 (+)
DescriptionSimilar to NFS2: Cysteine desulfurase 1, chloroplastic
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g08490 Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
The AtNFS2 gene from Arabidopsis thaliana encodes a NifS-like plastidial cysteine desulphurase.2002 · DOI: 10.1042/bj20020322
The chloroplast NifS-like protein of Arabidopsis thaliana is required for iron-sulfur cluster formation in ferredoxin.2005 · DOI: 10.1007/s00425-004-1388-1
CpSufE activates the cysteine desulfurase CpNifS for chloroplastic Fe-S cluster formation.2006 · DOI: 10.1074/jbc.m512737200

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_018729 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0001887 selenium compound metabolic process Biological Process
GO:0006534 cysteine metabolic process Biological Process
GO:0006790 sulfur compound metabolic process Biological Process
GO:0010269 response to selenium ion Biological Process
GO:0018283 iron incorporation into metallo-sulfur cluster Biological Process
GO:0009507 chloroplast Cellular Component
GO:0009570 chloroplast stroma Cellular Component
GO:0009000 selenocysteine lyase activity Molecular Function
GO:0030170 pyridoxal phosphate binding Molecular Function
GO:0031071 cysteine desulfurase activity Molecular Function
KEGG gene cross-reference
ath:AT1G08490
bha:BH3469
bsu:BSU32690
sep:SE_0608
syn:slr0077
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.870
Rank 1 · TkA08G080110 · TK1151
Mitochondrion0.159
Rank 2 · TkA08G080110 · TK1151
Cytoplasm0.081
Rank 3 · TkA08G080110 · TK1151
Peroxisome0.041
Rank 4 · TkA08G080110 · TK1151
Nucleus0.033
Rank 5 · TkA08G080110 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF20782TssR_VWA16-38 aa
PF00266Aminotran_580-454 aa
PF20782TssR_VWA103-206 aa
PF01053Cys_Met_Meta_PP109-141 aa
PF00155Aminotran_1_2125-299 aa
PF01041DegT_DnrJ_EryC1131-261 aa
PF01212Beta_elim_lyase143-296 aa
PF01053Cys_Met_Meta_PP169-281 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G080110PF20782TssR_VWA16380.1911.5
TkA08G080110PF00266Aminotran_5804547.3e-147489.9
TkA08G080110PF20782TssR_VWA1032060.1911.5
TkA08G080110PF01053Cys_Met_Meta_PP1091414.5e-0832.8
TkA08G080110PF00155Aminotran_1_21252990.0001821.5
TkA08G080110PF01041DegT_DnrJ_EryC11312610.0001521.8
TkA08G080110PF01212Beta_elim_lyase1432960.112.6
TkA08G080110PF01053Cys_Met_Meta_PP1692814.5e-0832.8
TkA08G080110PF26337Gtf3_C2152380.03115.0
TkA08G080110PF26337Gtf3_C3403510.03115.0
TkA08G080110PF26337Gtf3_C3754440.03115.0
TkA08G080110PF01041DegT_DnrJ_EryC14054340.0001521.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q93WX6Arabidopsis thalianasp|Q93WX6|CNIF1_ARATH Cysteine desulfurase 1, chloroplastic74.900%Swiss-ProtHigh

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