TkA08G072390 | RubberDandelionOmics

Gene overview

TkA08G072390

Reference: TK1151 Chr: Chr08 Coordinates: 18674217-18675352 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

462 bp · TkA08G072390|TK1151|cDNA

AGCGAGGAAGAGAGTAATCCATCATACAGAGAGTCCGTCAAATGCAAAATCTTTCTAGGGTTCACTTCAAACCTCATTTCTTCTGGTGTTCGAGACAACAATATTCCTGTATTTTGCCCGGCCTTGACTGATGGATCTCTTGGGGACATGTTATATTTCCATGCATTTCGCAATCCCGGTCTTGTTATTGACATAGTACAAGATGTATTGGCGATGGACGGTGAAGCAGTGCATGCAAACCCTAGGAAGACAGGGATGAT...

CDS

Download CDS FASTA

462 bp · TkA08G072390|TK1151|CDS

AGCGAGGAAGAGAGTAATCCATCATACAGAGAGTCCGTCAAATGCAAAATCTTTCTAGGGTTCACTTCAAACCTCATTTCTTCTGGTGTTCGAGACAACAATATTCCTGTATTTTGCCCGGCCTTGACTGATGGATCTCTTGGGGACATGTTATATTTCCATGCATTTCGCAATCCCGGTCTTGTTATTGACATAGTACAAGATGTATTGGCGATGGACGGTGAAGCAGTGCATGCAAACCCTAGGAAGACAGGGATGAT...

Protein

Download Protein FASTA

153 aa · TkA08G072390|TK1151|PROTEIN

SEEESNPSYRESVKCKIFLGFTSNLISSGVRDNNIPVFCPALTDGSLGDMLYFHAFRNPGLVIDIVQDVLAMDGEAVHANPRKTGMILLGGGLPKHHICNANMMRNGADYAVYINTAQEFDGSDSGARPDEAVSWGKIRTNAKSVKVFSFLVY

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G072390`
TK1151 ID	TkA08G072390
OH-1004 ID	LXL04_018618
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	56.800
Protein coverage (%)	TK1151 96.078 / OH-1004 35.238 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA08G072390

Location Chr08:18674217-18675352 (-)

Description Similar to DHS1: Deoxyhypusine synthase

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g05920`	Catalyzes the NAD-dependent oxidative cleavage of spermidine and the subsequent transfer of the butylamine moiety of spermidine to the epsilon-amino group of a specific lysine residue of the eIF-5A precursor protein to form the intermediate deoxyhypusine residue.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_018618 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0008216 spermidine metabolic process Biological Process

GO:0009553 embryo sac development Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0034038 deoxyhypusine synthase activity Molecular Function

KEGG gene cross-reference

ag:CAB65461

ath:AT5G05920

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.499

Rank 1 · TkA08G072390 · TK1151

Nucleus0.340

Rank 2 · TkA08G072390 · TK1151

Extracellular0.093

Rank 3 · TkA08G072390 · TK1151

Peroxisome0.091

Rank 4 · TkA08G072390 · TK1151

Mitochondrion0.062

Rank 5 · TkA08G072390 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01916DS11-32 aa

PF01916DS33-148 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G072390	`PF01916`	DS	11	32	7.5e-54	183.7
TkA08G072390	`PF01916`	DS	33	148	7.5e-54	183.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FI94`	Arabidopsis thaliana	sp\|Q9FI94\|DHYS_ARATH Deoxyhypusine synthase	48.800%	Swiss-Prot	Medium

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