TkA08G069740 | RubberDandelionOmics

Gene overview

TkA08G069740

Reference: TK1151 Chr: Chr08 Coordinates: 17973285-17975586 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1288 bp · TkA08G069740|TK1151|cDNA

TCAGGGACAAGTGCTGCCATAAAGGCAGCATAGTAGCAGCAGAAGATGCAACAGAGGTGTTGCAGTCATAATTCAGTGTGCACACCAGATCTCTATCACGAACAGAAACGACCTGTATATTTTTATCTCTTTCTGAAGCTTTTATTCAGACCCCAGACTCTCCATTTCTCTTTCTTATTTCGCCGGAAAACATACCGAGACTTCTTCAGCTTTTCGGTGCTGATCGGCAATGGAAACGATGACTGCAGCAAGGAACGACG...

CDS

Download CDS FASTA

906 bp · TkA08G069740|TK1151|CDS

ATGGAAACGATGACTGCAGCAAGGAACGACGGTTCTCGGTTTCCTTTCACGTCAAGTCAATGGCAGGAGCTAGAACACCAAGCGCTTGTTTACAAGTATATGATTTCCGGTATGCCTATTCCTCCTGATCTCCTCTTCTCCATCCAACGAAGCTTGGATTCGTCCACTAAACTCTTCCTGCACCACCAGCCTCCTCATCAATCAATCGGACTCGGATGGAACTGTTTCCAGATGGGATTCGGGAGAAAAATAGATCCAGA...

Protein

Download Protein FASTA

301 aa · TkA08G069740|TK1151|PROTEIN

METMTAARNDGSRFPFTSSQWQELEHQALVYKYMISGMPIPPDLLFSIQRSLDSSTKLFLHHQPPHQSIGLGWNCFQMGFGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVETTNYSSSPNTSPSLLSISTKPINQPSPSFHYPQLSSSRPPGNVESSHDRSFWLESSSSVYSEKDNCRYGMKEEADEHPFLTESNSSSVPIQSKHYRSLSDYQNGYSSYLQLQNTPPKRLNNYDDLGLKMERK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G069740`
TK1151 ID	TkA08G069740
OH-1004 ID	LXL04_002335
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	51.200
Protein coverage (%)	TK1151 96.678 / OH-1004 93.694 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA08G069740

Location Chr08:17973285-17975586 (+)

Description Similar to GRF1: Growth-regulating factor 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g13960`	Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues.	The transcription factor AtGRF5 and the transcription coactivator AN3 regulate cell proliferation in leaf primordia of Arabidopsis thaliana.2005 · DOI: 10.1111/j.1365-313x.2005.02429.x
`At2g06200`	Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`UniProt: A2XA73`	Transcription activator that plays a regulatory role in gibberellin-induced stem elongation.	No verified direct reference in this release
`Os02g0776900`	Transcription activator that plays a regulatory role in gibberellin-induced stem elongation.	No verified direct reference in this release
`Os04g0600900`	Transcription activator that plays a regulatory role in gibberellin-induced stem elongation.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_002335 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0008283 cell population proliferation Biological Process

GO:0009409 response to cold Biological Process

GO:0009739 response to gibberellin Biological Process

GO:0030912 response to deep water Biological Process

GO:0032502 developmental process Biological Process

GO:0045893 positive regulation of DNA-templated transcription Biological Process

GO:0048316 seed development Biological Process

GO:0048366 leaf development Biological Process

GO:0005634 nucleus Cellular Component

GO:0005524 ATP binding Molecular Function

KEGG gene cross-reference

ath:AT3G13960

dosa:Os02g0701300

dosa:Os02g0776900

dosa:Os04g0600900

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.975

Rank 1 · TkA08G069740 · TK1151

Cytoplasm0.092

Rank 2 · TkA08G069740 · TK1151

Cell membrane0.028

Rank 3 · TkA08G069740 · TK1151

Endoplasmic reticulum0.019

Rank 4 · TkA08G069740 · TK1151

Plastid0.014

Rank 5 · TkA08G069740 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08880QLQ15-49 aa

PF08879WRC86-128 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G069740	`PF08880`	QLQ	15	49	9e-16	58.0
TkA08G069740	`PF08879`	WRC	86	128	1.4e-21	76.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8L8A6`	Arabidopsis thaliana	sp\|Q8L8A6\|GRF5_ARATH Growth-regulating factor 5	73.800%	Swiss-Prot	Low
`Q9ZQ12`	Arabidopsis thaliana	sp\|Q9ZQ12\|GRF6_ARATH Growth-regulating factor 6	62.900%	Swiss-Prot	Low
`A2XA73`	Oryza sativa subsp. indica	sp\|A2XA73\|GRF1_ORYSI Growth-regulating factor 1	71.200%	Swiss-Prot	Low
`Q6AWY8`	Oryza sativa subsp. japonica	sp\|Q6AWY8\|GRF1_ORYSJ Growth-regulating factor 1	71.200%	Swiss-Prot	Low
`Q6AWY6`	Oryza sativa subsp. japonica	sp\|Q6AWY6\|GRF3_ORYSJ Growth-regulating factor 3	59.600%	Swiss-Prot	Low

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