TkA08G063920 | RubberDandelionOmics

Gene overview

TkA08G063920

Reference: TK1151 Chr: Chr08 Coordinates: 16335935-16336327 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

393 bp · TkA08G063920|TK1151|cDNA

ATGCACAAAAGTGGAGCGAATGATTTTCACGTTTTTAGCGCGACAATGGAACAATACGAAAAAGCCCATCCTAACCGGCACACTTTTCTGTATGTTCAACATTGGCTAAGATTGCGGGAGTGTCGAAAATGGAAAAACAGGAAGGAAAGTGATGCATCGGCATCTACCGGATCGAAGCAGACAAAAAAAGAGAGTCAAAGTTCACAATCGGACGGGAGGACATTCATCGACATAAATTACGAGCCGATCGACCATCCTGA...

CDS

Download CDS FASTA

393 bp · TkA08G063920|TK1151|CDS

ATGCACAAAAGTGGAGCGAATGATTTTCACGTTTTTAGCGCGACAATGGAACAATACGAAAAAGCCCATCCTAACCGGCACACTTTTCTGTATGTTCAACATTGGCTAAGATTGCGGGAGTGTCGAAAATGGAAAAACAGGAAGGAAAGTGATGCATCGGCATCTACCGGATCGAAGCAGACAAAAAAAGAGAGTCAAAGTTCACAATCGGACGGGAGGACATTCATCGACATAAATTACGAGCCGATCGACCATCCTGA...

Protein

Download Protein FASTA

130 aa · TkA08G063920|TK1151|PROTEIN

MHKSGANDFHVFSATMEQYEKAHPNRHTFLYVQHWLRLRECRKWKNRKESDASASTGSKQTKKESQSSQSDGRTFIDINYEPIDHPDEEPLRRPVGRYKAKKVASSSKSINSEHSFVDAFGEKFDNYVKL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G063920`
TK1151 ID	TkA08G063920
OH-1004 ID	LXL04_024031
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	58.200
Protein coverage (%)	TK1151 51.538 / OH-1004 6.793 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA08G063920`
Location	Chr08:16335935-16336327 (+)
Description	Similar to MTP12: Metal tolerance protein 12
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_024031` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0006882 intracellular zinc ion homeostasis Biological Process GO:0030001 metal ion transport Biological Process GO:0071578 zinc ion import across plasma membrane Biological Process GO:1904257 zinc ion import into Golgi lumen Biological Process GO:0000139 Golgi membrane Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005739 mitochondrion Cellular Component GO:0005774 vacuolar membrane Cellular Component GO:0005794 Golgi apparatus Cellular Component GO:0016020 membrane Cellular Component GO:0031410 cytoplasmic vesicle Cellular Component GO:1990674 Golgi cis cisterna membrane Cellular Component
KEGG gene cross-reference	ath:AT2G04620 bta:613851 dosa:Os08g0422200 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.971

Rank 1 · TkA08G063920 · TK1151

Cytoplasm0.143

Rank 2 · TkA08G063920 · TK1151

Mitochondrion0.014

Rank 3 · TkA08G063920 · TK1151

Cell membrane0.012

Rank 4 · TkA08G063920 · TK1151

Extracellular0.007

Rank 5 · TkA08G063920 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14303NAM-associated28-106 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G063920	`PF14303`	NAM-associated	28	106	3.7e-05	25.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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