TkA08G059180 | RubberDandelionOmics

Gene overview

TkA08G059180

Reference: TK1151 Chr: Chr08 Coordinates: 15164896-15175785 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2452 bp · TkA08G059180|TK1151|cDNA

CCTTAAATTCGCTTTGATTACAAAACCCCTAATTCCTGATTACAGCATCCATCATGGATGCTCTACGCCGGTCTAATCTCGACCTTCATTCCCCCATTTCATCACTTTACACTAAAACCCCTCAAACACCCACTTCAATTTTACCCTATAAGTACCTATTCTCTTCTTCCTCCAGTTTCAGTGGTTACCATAGCAAGTGTAAAGCATCAACACCGCCTCAAGCTATCCGAAAATCAAATGAATCAGTTGAATCCAGTAAG...

CDS

Download CDS FASTA

1533 bp · TkA08G059180|TK1151|CDS

ATGGATGCTCTACGCCGGTCTAATCTCGACCTTCATTCCCCCATTTCATCACTTTACACTAAAACCCCTCAAACACCCACTTCAATTTTACCCTATAAGTACCTATTCTCTTCTTCCTCCAGTTTCAGTGGTTACCATAGCAAGTGTAAAGCATCAACACCGCCTCAAGCTATCCGAAAATCAAATGAATCAGTTGAATCCAGTAAGAAATTGGTTGATTCAATCGCTAAAGGTTTGATCGGGCTCGCTGCTGCGGTTTC...

Protein

Download Protein FASTA

510 aa · TkA08G059180|TK1151|PROTEIN

MDALRRSNLDLHSPISSLYTKTPQTPTSILPYKYLFSSSSSFSGYHSKCKASTPPQAIRKSNESVESSKKLVDSIAKGLIGLAAAVSVCLDSPALAESVTIAFPASRTHEVNAVQRTLVETWGLIRETFVDPTFNHQDWDSNFQQTMVEMLPLRTADAAYSKIRGMLSTLGDPFTRIISPKEYQSFRIGSDGNVQGVGLFVNTEPNTGHLVVLSCVEGSPAARAGIHVGDELIEINGERVNGISGEAAAQKLRGHVGTTV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G059180`
TK1151 ID	TkA08G059180
OH-1004 ID	LXL04_018419
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	96.500
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA08G059180

Location Chr08:15164896-15175785 (-)

Description Similar to CTPA3: Carboxyl-terminal-processing peptidase 3, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g57680`	Protease involved in the C-terminal processing of the chloroplastic D1 protein of photosystem II.	No verified direct reference in this release
`At4g17740`	Protease involved in the C-terminal processing of the chloroplastic D1 protein of photosystem II.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_018419 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006508 proteolysis Biological Process

GO:0007165 signal transduction Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009543 chloroplast thylakoid lumen Cellular Component

GO:0009579 thylakoid Cellular Component

GO:0031977 thylakoid lumen Cellular Component

GO:0004175 endopeptidase activity Molecular Function

GO:0004252 serine-type endopeptidase activity Molecular Function

GO:0008233 peptidase activity Molecular Function

KEGG gene cross-reference

ag:AAC49799

ath:AT3G57680

ath:AT4G17740

syn:slr0008

syp:SYNPCC7002_A0843

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.980

Rank 1 · TkA08G059180 · TK1151

Mitochondrion0.028

Rank 2 · TkA08G059180 · TK1151

Cytoplasm0.017

Rank 3 · TkA08G059180 · TK1151

Nucleus0.014

Rank 4 · TkA08G059180 · TK1151

Cell membrane0.013

Rank 5 · TkA08G059180 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14684Tricorn_C1119-141 aa

PF00595PDZ194-264 aa

PF13180PDZ_2201-269 aa

PF17820PDZ_6212-264 aa

PF14685PDZ_Tricorn217-267 aa

PF03572Peptidase_S41307-469 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G059180	`PF14684`	Tricorn_C1	119	141	0.013	16.2
TkA08G059180	`PF00595`	PDZ	194	264	4.1e-11	43.8
TkA08G059180	`PF13180`	PDZ_2	201	269	1.2e-08	35.8
TkA08G059180	`PF17820`	PDZ_6	212	264	2.6e-12	47.0
TkA08G059180	`PF14685`	PDZ_Tricorn	217	267	0.011	16.5
TkA08G059180	`PF03572`	Peptidase_S41	307	469	7.2e-51	172.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`F4J3G5`	Arabidopsis thaliana	sp\|F4J3G5\|CTPA3_ARATH Carboxyl-terminal-processing peptidase 3, chloroplastic	72.300%	Swiss-Prot	High
`O23614`	Arabidopsis thaliana	sp\|O23614\|CTPA2_ARATH Carboxyl-terminal-processing peptidase 2, chloroplastic	39.400%	Swiss-Prot	Medium

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