TkA08G054070 | RubberDandelionOmics

Gene overview

TkA08G054070

Reference: TK1151 Chr: Chr08 Coordinates: 13856604-13862572 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3733 bp · TkA08G054070|TK1151|cDNA

GTTAGGAGCCTGAACAAGTTCAAACACTCCATTAACGGCCATAATACTTCAAGTTCCTTTTCATTCCTCACCTCACTCCCTTAAATCTCTCTCTCTCTCTCTCTCTCTCTGGGTTTTCACCATTTCAACAAATCGCTTCTCGACACCGAATCTACTCTCAGTTCGCGACATTTTGGAGCGGTCAACGGCCGGCAACACCAGATATGGATTGAGTTGACTCGGTGAGCTCAGCTGACAAACTCGTTATACTTTGAAAGAGT...

CDS

Download CDS FASTA

1950 bp · TkA08G054070|TK1151|CDS

ATGATGAAATCTGCAATGATGAAAGACCTGTACTCTGAAATTGAACGACTCAAGCAAGAGGTATATGCTACAAGAGAGAAGAATGGAATCTACATACCGAAAGACAGATACCTGCAGGAAGAAGAAGAGAAGAAGGCAATGGCGGAAAAAATAGAACGCATGGAACTTGATGCTGAGTCAAGAGGCAAGCAATTCATGGAGCTTCAAGAACTTTACAACTCTCAGCAGCTAGTGAACACGAATTTAACTGGAAAACTCGA...

Protein

Download Protein FASTA

649 aa · TkA08G054070|TK1151|PROTEIN

MMKSAMMKDLYSEIERLKQEVYATREKNGIYIPKDRYLQEEEEKKAMAEKIERMELDAESRGKQFMELQELYNSQQLVNTNLTGKLERTEIKLQETEHSLLDLEERHRQANITIKEKEFLIFNLLKSEKALVERAFDLRSELENATSDVSNLFTKIERKDKIEDENRILVQQFQSELTQQLDILHKSVAASVTQQDQQLKAMEQDMQSFVSTKTQATEELQAGLQKLKTLYGYGINSLDNLSNEVNANSQSTIDHLNSQV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G054070`
TK1151 ID	TkA08G054070
OH-1004 ID	LXL04_017721
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	99.200
Protein coverage (%)	TK1151 100.000 / OH-1004 62.214 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA08G054070

Location Chr08:13856604-13862572 (+)

Description Similar to KIN5D: Kinesin-like protein KIN-5D

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g45850`	Responsible for microtubule translocation.	No verified direct reference in this release
`At2g28620`	Responsible for microtubule translocation.	No verified direct reference in this release
`At2g37420`	Responsible for microtubule translocation.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os05g0117798`	Responsible for microtubule translocation.	No verified direct reference in this release
`Os08g0558400`	Responsible for microtubule translocation.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_017721 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000281 mitotic cytokinesis Biological Process

GO:0000911 cytokinesis by cell plate formation Biological Process

GO:0007018 microtubule-based movement Biological Process

GO:0007052 mitotic spindle organization Biological Process

GO:0009826 unidimensional cell growth Biological Process

GO:0043622 cortical microtubule organization Biological Process

GO:0051231 spindle elongation Biological Process

GO:0090307 mitotic spindle assembly Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005819 spindle Cellular Component

GO:0005874 microtubule Cellular Component

GO:0005876 spindle microtubule Cellular Component

KEGG gene cross-reference

ath:AT2G28620

ath:AT2G37420

dosa:Os05g0117798

osa:9268593

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.687

Rank 1 · TkA08G054070 · TK1151

Nucleus0.258

Rank 2 · TkA08G054070 · TK1151

Golgi apparatus0.054

Rank 3 · TkA08G054070 · TK1151

Mitochondrion0.053

Rank 4 · TkA08G054070 · TK1151

Cell membrane0.045

Rank 5 · TkA08G054070 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF05873Mt_ATP-synt_D32-66 aa

PF04108ATG17_like68-162 aa

PF20072DUF6468131-158 aa

PF05873Mt_ATP-synt_D161-241 aa

PF04108ATG17_like179-355 aa

PF20072DUF6468199-229 aa

PF20072DUF6468251-284 aa

PF20072DUF6468331-343 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G054070	`PF05873`	Mt_ATP-synt_D	32	66	0.015	15.8
TkA08G054070	`PF04108`	ATG17_like	68	162	0.00044	20.6
TkA08G054070	`PF20072`	DUF6468	131	158	0.064	14.1
TkA08G054070	`PF05873`	Mt_ATP-synt_D	161	241	0.015	15.8
TkA08G054070	`PF04108`	ATG17_like	179	355	0.00044	20.6
TkA08G054070	`PF20072`	DUF6468	199	229	0.064	14.1
TkA08G054070	`PF20072`	DUF6468	251	284	0.064	14.1
TkA08G054070	`PF20072`	DUF6468	331	343	0.064	14.1
TkA08G054070	`PF05873`	Mt_ATP-synt_D	375	382	0.015	15.8
TkA08G054070	`PF04108`	ATG17_like	391	553	0.00044	20.6
TkA08G054070	`PF05873`	Mt_ATP-synt_D	430	461	0.015	15.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9LZU5`	Arabidopsis thaliana	sp\|Q9LZU5\|KN5D_ARATH Kinesin-like protein KIN-5D	62.600%	Swiss-Prot	High
`F4IIS5`	Arabidopsis thaliana	sp\|F4IIS5\|KN5A_ARATH Kinesin-like protein KIN-5A	54.600%	Swiss-Prot	High
`Q0WQJ7`	Arabidopsis thaliana	sp\|Q0WQJ7\|KN5B_ARATH Kinesin-like protein KIN-5B	29.600%	Swiss-Prot	Low
`Q5W7C6`	Oryza sativa subsp. japonica	sp\|Q5W7C6\|KN5A_ORYSJ Kinesin-like protein KIN-5A	58.200%	Swiss-Prot	High
`B7EJ91`	Oryza sativa subsp. japonica	sp\|B7EJ91\|KN5C_ORYSJ Kinesin-like protein KIN-5C	29.400%	Swiss-Prot	Low

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