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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G054050
Reference: TK1151 Chr: Chr08 Coordinates: 13838873-13851338 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

7146 bp · TkA08G054050|TK1151|cDNA

CCGTAACCTTTATTGCCTTGACTCAAATTCTCCCCTCAAAGACACGATTTATAAAGTTTTAATCGCACCTGATTGTAAAACCATTGAAACCAAATCGAAATCCATGACATGTCTAATGCTCGGAGATTCATAAATCGGGTGTGCTCGTGAAACCACTGGAAGTCTGGAACCAAATTGAACTCCATTGAAACCAAATCAAACCTCCTCTCCCTCTCTTTCATGGGATGAGGACTTACGTTCGAGAAAACGTCCCTCTATCG...

CDS

Download CDS FASTA

3558 bp · TkA08G054050|TK1151|CDS

ATGCATCCAGATAGCGAGCTCCAAAATTATCTTGTACAGATTATGGATATGCTTCGTGCGGCTTCTGTTGTAGATGCACAATCACTGGCTTGTGTTTTTTATATTCTACGGGTTGGTGTGATTGATCAAATGACTGAACCTACACAAAGGGTCTTTTTAGTTAATCTAGGAAAGCAGCTTCAGTCTCCTGATGCAAATCCATCCATGAAAATTGCTGCTTTACGCACTTTGTCATATACCCTCAAAACTTTAGGAGAGGT...

Protein

Download Protein FASTA

1185 aa · TkA08G054050|TK1151|PROTEIN

MHPDSELQNYLVQIMDMLRAASVVDAQSLACVFYILRVGVIDQMTEPTQRVFLVNLGKQLQSPDANPSMKIAALRTLSYTLKTLGEVPVEFKEVLDDTAVAALSNSSPLVRSESALTLRALAEIDPTCVGGLVNYGVTTLKALRENVSFGKGSNLKVELDSLSGQATVLAALASVSPKLPLGYPARLPRTLLDVARKMLTEASRNPVVATVEKEAGWLLLSSLLSSMPKEEMEDQVFDILSLWTDVFSRGQDHQPDSPED...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G054050
TK1151 IDTkA08G054050
OH-1004 IDLXL04_017722
Relationship / confidenceSequence Supported Annotation Or Model Conflict / Review
Protein identity (%)99.800
Protein coverage (%)TK1151 97.553 / OH-1004 52.074
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G054050
LocationChr08:13838873-13851338 (-)
DescriptionSimilar to SWEETIE: Protein SWEETIE
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g67140 May regulate multiple metabolic, hormonal and stress-related pathways.
The Arabidopsis sweetie mutant is affected in carbohydrate metabolism and defective in the control of growth, development and senescence.2008 · DOI: 10.1111/j.1365-313x.2008.03541.x
Has Arabidopsis SWEETIE protein a role in sugar flux and utilization?2008 · DOI: 10.4161/psb.3.9.6470

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_017722 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0003401 axis elongation Biological Process
GO:0005975 carbohydrate metabolic process Biological Process
GO:0005982 starch metabolic process Biological Process
GO:0005991 trehalose metabolic process Biological Process
GO:0006897 endocytosis Biological Process
GO:0008104 intracellular protein localization Biological Process
GO:0009693 ethylene biosynthetic process Biological Process
GO:0010364 regulation of ethylene biosynthetic process Biological Process
GO:0015031 protein transport Biological Process
GO:0042147 retrograde transport, endosome to Golgi Biological Process
GO:1900055 regulation of leaf senescence Biological Process
GO:0005634 nucleus Cellular Component
KEGG gene cross-reference
ath:AT1G67140
hsa:25938
hsa:54497
mmu:320473
xtr:100036680
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.416
Rank 1 · TkA08G054050 · TK1151
Nucleus0.395
Rank 2 · TkA08G054050 · TK1151
Golgi apparatus0.162
Rank 3 · TkA08G054050 · TK1151
Lysosome / Vacuole0.102
Rank 4 · TkA08G054050 · TK1151
Cell membrane0.100
Rank 5 · TkA08G054050 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF11701UNC45-central9-77 aa
PF25782TPR_CAND148-121 aa
PF13646HEAT_256-122 aa
PF01602Adaptin_N65-128 aa
PF24436INTS7_N303-331 aa
PF25782TPR_CAND1449-512 aa
PF24436INTS7_N458-623 aa
PF25782TPR_CAND1576-612 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G054050PF11701UNC45-central9770.01216.1
TkA08G054050PF25782TPR_CAND1481210.2412.5
TkA08G054050PF13646HEAT_2561220.05614.4
TkA08G054050PF01602Adaptin_N651280.05112.9
TkA08G054050PF24436INTS7_N3033310.04813.4
TkA08G054050PF25782TPR_CAND14495120.2412.5
TkA08G054050PF24436INTS7_N4586230.04813.4
TkA08G054050PF25782TPR_CAND15766120.2412.5
TkA08G054050PF20210Laa1_Sip1_HTR56137055.9e-45154.1
TkA08G054050PF24436INTS7_N6717780.04813.4
TkA08G054050PF01602Adaptin_N6767760.05112.9
TkA08G054050PF25782TPR_CAND16807170.2412.5
TkA08G054050PF11701UNC45-central7037730.01216.1
TkA08G054050PF03810IBN_N7087610.04114.6
TkA08G054050PF13646HEAT_27147450.05614.4
TkA08G054050PF20210Laa1_Sip1_HTR589810825.9e-45154.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
F4HRS2Arabidopsis thalianasp|F4HRS2|SWTIE_ARATH Protein SWEETIE66.400%Swiss-ProtHigh

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