TkA08G053300 | RubberDandelionOmics

Gene overview

TkA08G053300

Reference: TK1151 Chr: Chr08 Coordinates: 13647175-13647651 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

477 bp · TkA08G053300|TK1151|cDNA

ATGCACGACATTCTCGGCGGGTCAAACCCCTCCGCCAAAGCCGTCACCGGAGCCGTCACCAACCCCGCAGTGAACGGCCAGGTCCCTTTCGCTAAACCCAACGGAGCAAATCTCCCCGTCAACAATGGCGTCTCTCAAGACGACGGAAACAGCGGGATTATCAACAACAACAACCTCCCCTTTCTTACCGGTCTAGGTGGAACCACTTCGAATGTCTTTCAAAAACAACAACAACAACAACAACAAACACAACAACAATG...

CDS

Download CDS FASTA

477 bp · TkA08G053300|TK1151|CDS

ATGCACGACATTCTCGGCGGGTCAAACCCCTCCGCCAAAGCCGTCACCGGAGCCGTCACCAACCCCGCAGTGAACGGCCAGGTCCCTTTCGCTAAACCCAACGGAGCAAATCTCCCCGTCAACAATGGCGTCTCTCAAGACGACGGAAACAGCGGGATTATCAACAACAACAACCTCCCCTTTCTTACCGGTCTAGGTGGAACCACTTCGAATGTCTTTCAAAAACAACAACAACAACAACAACAAACACAACAACAATG...

Protein

Download Protein FASTA

158 aa · TkA08G053300|TK1151|PROTEIN

MHDILGGSNPSAKAVTGAVTNPAVNGQVPFAKPNGANLPVNNGVSQDDGNSGIINNNNLPFLTGLGGTTSNVFQKQQQQQQQTQQQCVCCHRRTAPARKRVAAVYVWNLTVIDDELTEGHELGSGLIGKAQGFYVSSSIDGKSQTMAFTVMFMHGELY

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G053300`
TK1151 ID	TkA08G053300
OH-1004 ID	LXL04_017742
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	81.800
Protein coverage (%)	TK1151 75.316 / OH-1004 54.751 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA08G053300

Location Chr08:13647175-13647651 (+)

Description Similar to DIR25: Dirigent protein 25

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g28670`	Dirigent proteins impart stereoselectivity on the phenoxy radical-coupling reaction, yielding optically active lignans from two molecules of coniferyl alcohol in the biosynthesis of lignans, flavonolignans, and alkaloids and thus plays a central role in plant secondary metabolism (By similarity).	Root suberin forms an extracellular barrier that affects water relations and mineral nutrition in Arabidopsis.2009 · DOI: 10.1371/journal.pgen.1000492 Water and solute permeabilities of Arabidopsis roots in relation to the amount and composition of aliphatic suberin.2011 · DOI: 10.1093/jxb/erq389
`At1g07730`	Dirigent proteins impart stereoselectivity on the phenoxy radical-coupling reaction, yielding optically active lignans from two molecules of coniferyl alcohol in the biosynthesis of lignans, flavonolignans, and alkaloids and thus plays a central role in plant secondary metabolism.	No verified direct reference in this release
`At2g39430`	Dirigent proteins impart stereoselectivity on the phenoxy radical-coupling reaction, yielding optically active lignans from two molecules of coniferyl alcohol in the biosynthesis of lignans, flavonolignans, and alkaloids and thus plays a central role in plant secondary metabolism.	No verified direct reference in this release
`At3g55230`	Dirigent proteins impart stereoselectivity on the phenoxy radical-coupling reaction, yielding optically active lignans from two molecules of coniferyl alcohol in the biosynthesis of lignans, flavonolignans, and alkaloids and thus plays a central role in plant secondary metabolism.	No verified direct reference in this release
`At4g13580`	Dirigent proteins impart stereoselectivity on the phenoxy radical-coupling reaction, yielding optically active lignans from two molecules of coniferyl alcohol in the biosynthesis of lignans, flavonolignans, and alkaloids and thus plays a central role in plant secondary metabolism.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_017742 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009699 phenylpropanoid biosynthetic process Biological Process

GO:0009809 lignin biosynthetic process Biological Process

GO:0010345 suberin biosynthetic process Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0048046 apoplast Cellular Component

GO:0048226 Casparian strip Cellular Component

KEGG gene cross-reference

ath:AT1G07730

ath:AT2G28670

ath:AT2G39430

ath:AT3G55230

ath:AT4G13580

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.519

Rank 1 · TkA08G053300 · TK1151

Cytoplasm0.415

Rank 2 · TkA08G053300 · TK1151

Mitochondrion0.076

Rank 3 · TkA08G053300 · TK1151

Endoplasmic reticulum0.066

Rank 4 · TkA08G053300 · TK1151

Cell membrane0.063

Rank 5 · TkA08G053300 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03018Dirigent1-30 aa

PF16619SUIM_assoc73-94 aa

PF03018Dirigent108-156 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G053300	`PF03018`	Dirigent	1	30	7.2e-13	49.2
TkA08G053300	`PF16619`	SUIM_assoc	73	94	1.6	9.5
TkA08G053300	`PF03018`	Dirigent	108	156	7.2e-13	49.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SIA8`	Arabidopsis thaliana	sp\|Q9SIA8\|DIR10_ARATH Dirigent protein 10	57.400%	Swiss-Prot	High
`Q9LQQ0`	Arabidopsis thaliana	sp\|Q9LQQ0\|DIR25_ARATH Dirigent protein 25	54.800%	Swiss-Prot	High
`O80630`	Arabidopsis thaliana	sp\|O80630\|DIR9_ARATH Dirigent protein 9	45.300%	Swiss-Prot	Medium
`Q9M3C8`	Arabidopsis thaliana	sp\|Q9M3C8\|DIR24_ARATH Dirigent protein 24	44.900%	Swiss-Prot	Medium
`Q9T0H8`	Arabidopsis thaliana	sp\|Q9T0H8\|DIR18_ARATH Dirigent protein 18	40.900%	Swiss-Prot	Medium

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