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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G050980
Reference: TK1151 Chr: Chr08 Coordinates: 13000078-13000638 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

561 bp · TkA08G050980|TK1151|cDNA

ATGGTGAGTTTCCGGCACACAAATGTGATGAAATATCAAATCTATAAGGAAGATGGGTTTGTCGGATTCCAGCAGTCGACGTCGTATCCGCCATCTCCGCCGTCTGTTCAGTCATATTCACCGCCATTTACAGTCACCTTCCATAGAGCATCAGTTTCTTCATCTTCTTCCGGCCCCAAAATCAGCTCTGATGTTCTGTTCATCATCGTGATTTTGGCCGTTTTGTTCTTCATCTCCGGTTGGCTTCACTTACTCGTTAG...

CDS

Download CDS FASTA

561 bp · TkA08G050980|TK1151|CDS

ATGGTGAGTTTCCGGCACACAAATGTGATGAAATATCAAATCTATAAGGAAGATGGGTTTGTCGGATTCCAGCAGTCGACGTCGTATCCGCCATCTCCGCCGTCTGTTCAGTCATATTCACCGCCATTTACAGTCACCTTCCATAGAGCATCAGTTTCTTCATCTTCTTCCGGCCCCAAAATCAGCTCTGATGTTCTGTTCATCATCGTGATTTTGGCCGTTTTGTTCTTCATCTCCGGTTGGCTTCACTTACTCGTTAG...

Protein

Download Protein FASTA

186 aa · TkA08G050980|TK1151|PROTEIN

MVSFRHTNVMKYQIYKEDGFVGFQQSTSYPPSPPSVQSYSPPFTVTFHRASVSSSSSGPKISSDVLFIIVILAVLFFISGWLHLLVRFLTKHNSQSQSENEKLRLLPTCSHAFHISCTDTWLLSNSTCPLCGNTLSMANLVKHPDIQSKLYDEIVSVVGPPPPPPPPGEEPESVINEDELKKMPHR

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA08G050980
TK1151 IDTkA08G050980
OH-1004 IDLXL04_006165
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)65.100
Protein coverage (%)TK1151 72.581 / OH-1004 40.373
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G050980
LocationChr08:13000078-13000638 (-)
DescriptionSimilar to ATL46: RING-H2 finger protein ATL46
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g40250 RING-H2 finger protein ATL46. No verified direct reference in this release
At4g30400 RING-H2 finger protein ATL13. No verified direct reference in this release
At2g18650 May be involved in female gametophyte development. No verified direct reference in this release
At1g23980 RING-H2 finger protein ATL47. No verified direct reference in this release
At3g48030 RING-H2 finger protein ATL48. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_006165 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009793 embryo development ending in seed dormancy Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0005634 nucleus Cellular Component
GO:0016020 membrane Cellular Component
GO:0008270 zinc ion binding Molecular Function
GO:0061630 ubiquitin protein ligase activity Molecular Function
KEGG gene cross-reference
ath:AT1G23980
ath:AT2G18650
ath:AT3G48030
ath:AT5G40250
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.294
Rank 1 · TkA08G050980 · TK1151
Endoplasmic reticulum0.285
Rank 2 · TkA08G050980 · TK1151
Nucleus0.230
Rank 3 · TkA08G050980 · TK1151
Cytoplasm0.197
Rank 4 · TkA08G050980 · TK1151
Lysosome / Vacuole0.188
Rank 5 · TkA08G050980 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF16101PRIMA124-78 aa
PF17093PBP_N27-91 aa
PF22812CR_prot_dom_plant30-79 aa
PF13813MBOAT_266-93 aa
PF12861zf-ANAPC1182-97 aa
PF18774APOBEC4_like92-151 aa
PF12678zf-rbx198-131 aa
PF13639zf-RING_299-131 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G050980PF16101PRIMA124780.04114.4
TkA08G050980PF17093PBP_N27910.212.4
TkA08G050980PF22812CR_prot_dom_plant30791.99.7
TkA08G050980PF13813MBOAT_266930.04614.7
TkA08G050980PF12861zf-ANAPC1182970.0006920.3
TkA08G050980PF18774APOBEC4_like921510.1612.6
TkA08G050980PF12678zf-rbx1981315.7e-0936.8
TkA08G050980PF13639zf-RING_2991314.9e-0937.0
TkA08G050980PF17123zf-RING_11991170.0001921.8
TkA08G050980PF13920zf-C3HC4_31011340.09613.2
TkA08G050980PF14634zf-RING_51041320.0006320.4
TkA08G050980PF14447Prok-RING_41041370.06913.8
TkA08G050980PF00097zf-C3HC41061311.8e-0525.2
TkA08G050980PF12861zf-ANAPC111061370.0006920.3
TkA08G050980PF17120zf-RING_161071320.01915.3
TkA08G050980PF13923zf-C3HC4_21081313.8e-0524.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9FL07Arabidopsis thalianasp|Q9FL07|ATL46_ARATH RING-H2 finger protein ATL4638.300%Swiss-ProtLow
Q940Q4Arabidopsis thalianasp|Q940Q4|ATL13_ARATH RING-H2 finger protein ATL1335.400%Swiss-ProtLow
Q9ZV53Arabidopsis thalianasp|Q9ZV53|ATL49_ARATH Putative RING-H2 finger protein ATL4931.400%Swiss-ProtMedium
Q8GW38Arabidopsis thalianasp|Q8GW38|ATL47_ARATH RING-H2 finger protein ATL4769.400%Swiss-ProtLow
Q7X843Arabidopsis thalianasp|Q7X843|ATL48_ARATH RING-H2 finger protein ATL4869.800%Swiss-ProtLow

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