TkA08G050420 | RubberDandelionOmics

Gene overview

TkA08G050420

Reference: TK1151 Chr: Chr08 Coordinates: 12859310-12859756 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

402 bp · TkA08G050420|TK1151|cDNA

AAAATTACAGAAAAATTCAGACACTTGCCAGTTGTAGAACATGGACAGGTTATTGCTATACTTGACATTGAAAAATGTTTATATGATGCAATTGCACGTATGGAACGGGCAGCTGAAAAAGGAAAAGCCATAGCAGCTGCTGTTGAAGGTGTTGAGAAGCATTGGGGATCTTCTGTTTCCGGTTCCAACACGTTTGTTGAATCACTATTTTTGTGGCTGTTTTTGCCCCTTCCTGGATGTTCTTTTGCTGCTCTGGTGTT...

CDS

Download CDS FASTA

402 bp · TkA08G050420|TK1151|CDS

AAAATTACAGAAAAATTCAGACACTTGCCAGTTGTAGAACATGGACAGGTTATTGCTATACTTGACATTGAAAAATGTTTATATGATGCAATTGCACGTATGGAACGGGCAGCTGAAAAAGGAAAAGCCATAGCAGCTGCTGTTGAAGGTGTTGAGAAGCATTGGGGATCTTCTGTTTCCGGTTCCAACACGTTTGTTGAATCACTATTTTTGTGGCTGTTTTTGCCCCTTCCTGGATGTTCTTTTGCTGCTCTGGTGTT...

Protein

Download Protein FASTA

133 aa · TkA08G050420|TK1151|PROTEIN

KITEKFRHLPVVEHGQVIAILDIEKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGSSVSGSNTFVESLFLWLFLPLPGCSFAALVLLFSGGCFSVPSWCCTAAILQSCLRHWIPLPFNPASATVTNHGQKTL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G050420`
TK1151 ID	TkA08G050420
OH-1004 ID	LXL04_031948
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	91.700
Protein coverage (%)	TK1151 54.135 / OH-1004 13.187 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA08G050420

Location Chr08:12859310-12859756 (-)

Description Similar to CBSCBSPB5: CBS domain-containing protein CBSCBSPB5

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g50530`	CBS domain-containing protein CBSCBSPB4.	No verified direct reference in this release
`At5g50640`	CBS domain-containing protein CBSCBSPB5.	No verified direct reference in this release
`At5g63490`	CBS domain-containing protein CBSCBSPB1.	No verified direct reference in this release
`At3g52950`	CBS domain-containing protein CBSCBSPB3.	No verified direct reference in this release
`At2g36500`	CBS domain-containing protein CBSCBSPB2.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_031948 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009536 plastid Cellular Component

GO:0016020 membrane Cellular Component

KEGG gene cross-reference

ath:AT2G36500

ath:AT3G52950

ath:AT5G50530

ath:AT5G50640

ath:AT5G63490

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.339

Rank 1 · TkA08G050420 · TK1151

Nucleus0.304

Rank 2 · TkA08G050420 · TK1151

Cell membrane0.234

Rank 3 · TkA08G050420 · TK1151

Endoplasmic reticulum0.179

Rank 4 · TkA08G050420 · TK1151

Golgi apparatus0.101

Rank 5 · TkA08G050420 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14954LIX136-104 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G050420	`PF14954`	LIX1	36	104	0.15	12.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q0WLC7`	Arabidopsis thaliana	sp\|Q0WLC7\|Y5053_ARATH CBS domain-containing protein CBSCBSPB4	75.000%	Swiss-Prot	Medium
`P0DH79`	Arabidopsis thaliana	sp\|P0DH79\|Y5064_ARATH CBS domain-containing protein CBSCBSPB5	75.000%	Swiss-Prot	Medium
`Q9FMV3`	Arabidopsis thaliana	sp\|Q9FMV3\|Y5349_ARATH CBS domain-containing protein CBSCBSPB1	76.400%	Swiss-Prot	Medium
`Q9LF97`	Arabidopsis thaliana	sp\|Q9LF97\|Y3295_ARATH CBS domain-containing protein CBSCBSPB3	68.100%	Swiss-Prot	Medium
`Q9SJQ5`	Arabidopsis thaliana	sp\|Q9SJQ5\|Y2650_ARATH CBS domain-containing protein CBSCBSPB2	62.500%	Swiss-Prot	Medium

JBrowse

View in Genome Browser

Gene Card