TkA08G042170 | RubberDandelionOmics

Gene overview

TkA08G042170

Reference: TK1151 Chr: Chr08 Coordinates: 10757297-10759817 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2222 bp · TkA08G042170|TK1151|cDNA

ATTAATCAGAAGATCTCCATTTCACACACATATTCTCTCTCCTCGCTCCCTATGCGAATCTTCAACGAGAAGCGTGTGTTTCACCATCGCGTAAAGGCAGTATGTGTGGCGTAAATCTCAGTCACCAAGCACCTTCCGCCTCCGTCTATATATACGCACTCACCCAAATTCCCTACTTCTCAGTTACCCACATGTGATACCCTAAAAAGCTGAGGGGAATTTTAGAGACGAAGTGAAAGGGTAATGGGGAATTACAGGGT...

CDS

Download CDS FASTA

1782 bp · TkA08G042170|TK1151|CDS

ATGGGGAATTACAGGGTATGTTGGTGTTTCACTAGGAAGTTCAAAGTATCGGAAGCAGAGCCGCCGATTGACGTGAAAGAAGCGTTTAAGAAGTACTCCGACGATGGGATCCACATGACGCCGGATCAGCTCCGGCGGTTTTTGGAGGAATCTCAGGGCGACGATCAACACGATGGCTCGAGTTCGGAAGCTGAGCGGATTGTAGAGCAGATACTTCACAAACGGCATCATCTTCCCAAGTTTATGAACAGGAAGGCTCT...

Protein

Download Protein FASTA

593 aa · TkA08G042170|TK1151|PROTEIN

MGNYRVCWCFTRKFKVSEAEPPIDVKEAFKKYSDDGIHMTPDQLRRFLEESQGDDQHDGSSSEAERIVEQILHKRHHLPKFMNRKALSLEDFHHFLFSVDLNPPIKSQVHHDMTAPLSHYFIYTGHNSYLTGNQLSSNCSEIPIIKALKRGVRAIELDLWPNSSKNKVRVLHGRTLTSPVDLMRCLKAIKDYAFTASPYPVIITLEDHLTPDLQAKVAQMITETFGSMLYLPESENLEELPTPESLKYRILISTKPPKEY...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G042170`
TK1151 ID	TkA08G042170
OH-1004 ID	LXL04_017897
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	99.800
Protein coverage (%)	TK1151 99.325 / OH-1004 50.776 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA08G042170

Location Chr08:10757297-10759817 (-)

Description Similar to PLC4: Phosphoinositide phospholipase C 4

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g58700`	The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes.	No verified direct reference in this release
`At2g40116`	The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes.	No verified direct reference in this release
`At3g08510`	The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes.	N-terminal EF-hand-like domain is required for phosphoinositide-specific phospholipase C activity in Arabidopsis thaliana.2001 · DOI: 10.1016/s0014-5793(01)02453-x
`At3g55940`	The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes.	No verified direct reference in this release
`At5g58690`	The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_017897 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006950 response to stress Biological Process

GO:0009553 embryo sac development Biological Process

GO:0009556 microsporogenesis Biological Process

GO:0010601 positive regulation of auxin biosynthetic process Biological Process

GO:0016042 lipid catabolic process Biological Process

GO:0042742 defense response to bacterium Biological Process

GO:0048015 phosphatidylinositol-mediated signaling Biological Process

GO:0048437 floral organ development Biological Process

GO:0051209 release of sequestered calcium ion into cytosol Biological Process

GO:0005634 nucleus Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005829 cytosol Cellular Component

KEGG gene cross-reference

ath:AT2G40116

ath:AT3G08510

ath:AT5G58700

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.489

Rank 1 · TkA08G042170 · TK1151

Cytoplasm0.417

Rank 2 · TkA08G042170 · TK1151

Nucleus0.231

Rank 3 · TkA08G042170 · TK1151

Endoplasmic reticulum0.061

Rank 4 · TkA08G042170 · TK1151

Golgi apparatus0.052

Rank 5 · TkA08G042170 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF09279EF-hand_like24-100 aa

PF23617EF-hand_1526-62 aa

PF06156YabA37-78 aa

PF00388PI-PLC-X113-255 aa

PF06156YabA346-398 aa

PF00387PI-PLC-Y354-443 aa

PF00168C2465-566 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G042170	`PF09279`	EF-hand_like	24	100	7.2e-05	23.9
TkA08G042170	`PF23617`	EF-hand_15	26	62	0.023	15.5
TkA08G042170	`PF06156`	YabA	37	78	0.26	12.6
TkA08G042170	`PF00388`	PI-PLC-X	113	255	2.4e-55	186.8
TkA08G042170	`PF06156`	YabA	346	398	0.26	12.6
TkA08G042170	`PF00387`	PI-PLC-Y	354	443	3.2e-29	102.2
TkA08G042170	`PF00168`	C2	465	566	4.8e-15	56.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q944C1`	Arabidopsis thaliana	sp\|Q944C1\|PLCD4_ARATH Phosphoinositide phospholipase C 4	59.800%	Swiss-Prot	High
`Q8GV43`	Arabidopsis thaliana	sp\|Q8GV43\|PLCD6_ARATH Phosphoinositide phospholipase C 6	59.200%	Swiss-Prot	High
`Q39033`	Arabidopsis thaliana	sp\|Q39033\|PLCD2_ARATH Phosphoinositide phospholipase C 2	56.000%	Swiss-Prot	High
`Q9LY51`	Arabidopsis thaliana	sp\|Q9LY51\|PLCD7_ARATH Phosphoinositide phospholipase C 7	55.800%	Swiss-Prot	High
`Q944C2`	Arabidopsis thaliana	sp\|Q944C2\|PLCD5_ARATH Phosphoinositide phospholipase C 5	57.500%	Swiss-Prot	High

JBrowse

View in Genome Browser

Gene Card