TkA08G040470 | RubberDandelionOmics

Gene overview

TkA08G040470

Reference: TK1151 Chr: Chr08 Coordinates: 10295871-10297970 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1339 bp · TkA08G040470|TK1151|cDNA

CCAAGAATTATTTAGCAATAGATAGAAAAAATAATAATATAGAACGATAGAAAAGAAAAATAAAATAAAAAACTAGCTTGAAAGCCATGTATTTATATAAAACCTTTCTTTTGGTTTCAAACCATAACATTTCAAGAAACGAGTGTTTGCAAAATCGGGGGTATCAATGGAAATAGAAAAAGTTGATAATAATAGCCAACAATCCAAGAAACATGTTAGGAGGAGACATCAAACCAGCAAACCCTATAAAGATAGGCTTT...

CDS

Download CDS FASTA

741 bp · TkA08G040470|TK1151|CDS

ATGGAAATAGAAAAAGTTGATAATAATAGCCAACAATCCAAGAAACATGTTAGGAGGAGACATCAAACCAGCAAACCCTATAAAGATAGGCTTTTGAATATGGCTGAAGCTAGGAGAGAGATTGCTACCGCCCTTAAGTTCCATAGAGCTTCTATGAAGCAACAAGAGGGTAATTGTGTCATTCAACAACAACTACAACCACCACCGGAAAAACCAGGGAAGACAAATTCTAGGCTGTTTCCGGCCACCACCACCGCCAC...

Protein

Download Protein FASTA

246 aa · TkA08G040470|TK1151|PROTEIN

MEIEKVDNNSQQSKKHVRRRHQTSKPYKDRLLNMAEARREIATALKFHRASMKQQEGNCVIQQQLQPPPEKPGKTNSRLFPATTTATNGYSWPYSGYPFPPPIPPPPPLHQENLNLVLPKQTLGLNLNFQDFSNLKTSSIYQTPMAVYSSSSTSSSIAAKEVAAVGTCGGILAKGSPDDDDDDGNDDGYHPFDQVMEFPPWLINANESSCFQQFYDHQFSDEYSPDPALPCMDIGEIEGMDGEWLA

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G040470`
TK1151 ID	TkA08G040470
OH-1004 ID	LXL04_017917
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	90.700
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA08G040470

Location Chr08:10295871-10297970 (+)

Description Protein of unknown function

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g21280`	Required to regulate responses to abiotic stress (drought) and to oxidative stress leading to cell death.	Oxidative stress provokes distinct transcriptional responses in the stress-tolerant atr7 and stress-sensitive loh2 Arabidopsis thaliana mutants as revealed by multi-parallel quantitative real-time PCR analysis of ROS marker and antioxidant genes.2012 · DOI: 10.1016/j.plaphy.2012.05.024 A novel seed plants gene regulates oxidative stress tolerance in Arabidopsis thaliana.2020 · DOI: 10.1007/s00018-019-03202-5

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_017917 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0002238 response to molecule of fungal origin Biological Process

GO:0006970 response to osmotic stress Biological Process

GO:0006979 response to oxidative stress Biological Process

GO:0009414 response to water deprivation Biological Process

GO:0009651 response to salt stress Biological Process

GO:0010555 response to mannitol Biological Process

GO:0042542 response to hydrogen peroxide Biological Process

GO:0046686 response to cadmium ion Biological Process

GO:1901562 response to paraquat Biological Process

GO:1902882 regulation of response to oxidative stress Biological Process

GO:0005634 nucleus Cellular Component

KEGG gene cross-reference No functional description available

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.966

Rank 1 · TkA08G040470 · TK1151

Cytoplasm0.116

Rank 2 · TkA08G040470 · TK1151

Cell membrane0.034

Rank 3 · TkA08G040470 · TK1151

Endoplasmic reticulum0.031

Rank 4 · TkA08G040470 · TK1151

Plastid0.015

Rank 5 · TkA08G040470 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF30938ATR78-159 aa

PF30938ATR7179-246 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G040470	`PF30938`	ATR7	8	159	2.3e-72	245.0
TkA08G040470	`PF30938`	ATR7	179	246	2.3e-72	245.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9C589`	Arabidopsis thaliana	sp\|Q9C589\|ATR7_ARATH Protein AAL-toxin resistant 7	33.100%	Swiss-Prot	Medium

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