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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G032780
Reference: TK1151 Chr: Chr08 Coordinates: 8351448-8352968 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1452 bp · TkA08G032780|TK1151|cDNA

ATGGGCGTTTGGGCTTTCTCCCAAACTCTCTTCCTCGCCGTGTTCCCGCCGGAGCTCCGGTTTGCCTTCATTCAACTCTTGCAACGGTTAGTCAACTGTTTTTCTTCCTACTGCTACTACGATATCACTGAGATCGAAGGTGTAAACACCAATGAGCTGTATAACGCCGTCCAGCTCTATCTCTCCTACTCCGCTTCATCTTCATGTTCTGCCACTTCCTCCAACCGGTTGTCTATCACCCGCGGCCTCAACTCCTCCGC...

CDS

Download CDS FASTA

1452 bp · TkA08G032780|TK1151|CDS

ATGGGCGTTTGGGCTTTCTCCCAAACTCTCTTCCTCGCCGTGTTCCCGCCGGAGCTCCGGTTTGCCTTCATTCAACTCTTGCAACGGTTAGTCAACTGTTTTTCTTCCTACTGCTACTACGATATCACTGAGATCGAAGGTGTAAACACCAATGAGCTGTATAACGCCGTCCAGCTCTATCTCTCCTACTCCGCTTCATCTTCATGTTCTGCCACTTCCTCCAACCGGTTGTCTATCACCCGCGGCCTCAACTCCTCCGC...

Protein

Download Protein FASTA

483 aa · TkA08G032780|TK1151|PROTEIN

MGVWAFSQTLFLAVFPPELRFAFIQLLQRLVNCFSSYCYYDITEIEGVNTNELYNAVQLYLSYSASSSCSATSSNRLSITRGLNSSAITFGLSHNDRLTDVFNGVSVVWEHIVTPRQSQTFSWRPLPEEKRGFKLRINKRDKPYILKSYLDFITGKANEIRRKNEDRLLYTNSRGGSLDSRGQPWESVPFKHPSTFDTLAMDPVKKLEIMSDLRDFADGQAFYTRTGRAWKRGYLLYGPPGTGKSSMIAAMANFLGYDIY...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA08G032780
TK1151 IDTkA08G032780
OH-1004 IDLXL04_018025
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)95.300
Protein coverage (%)TK1151 100.000 / OH-1004 97.872
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G032780
LocationChr08:8351448-8352968 (+)
DescriptionSimilar to At5g57480: AAA-ATPase At5g57480
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g57480 AAA-ATPase At5g57480. No verified direct reference in this release
At4g25835 AAA-ATPase At4g25835. No verified direct reference in this release
At4g30250 AAA-ATPase At4g30250. No verified direct reference in this release
At5g40010 Required to regulate morphology and anatomy during seed maturation. No verified direct reference in this release
At3g28580 AAA-ATPase At3g28580. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_018025 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000304 response to singlet oxygen Biological Process
GO:0006950 response to stress Biological Process
GO:0009409 response to cold Biological Process
GO:0009414 response to water deprivation Biological Process
GO:0009651 response to salt stress Biological Process
GO:0009737 response to abscisic acid Biological Process
GO:0010154 fruit development Biological Process
GO:0010431 seed maturation Biological Process
GO:0005634 nucleus Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0005783 endoplasmic reticulum Cellular Component
GO:0005886 plasma membrane Cellular Component
KEGG gene cross-reference
ath:AT3G28580
ath:AT4G25835
ath:AT4G30250
ath:AT5G40010
ath:AT5G57480
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.264
Rank 1 · TkA08G032780 · TK1151
Mitochondrion0.264
Rank 2 · TkA08G032780 · TK1151
Cytoplasm0.218
Rank 3 · TkA08G032780 · TK1151
Plastid0.102
Rank 4 · TkA08G032780 · TK1151
Peroxisome0.086
Rank 5 · TkA08G032780 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14363AAA_assoc15-112 aa
PF13479AAA_24192-232 aa
PF13191AAA_16224-260 aa
PF13555AAA_29231-255 aa
PF12775AAA_7231-278 aa
PF05673DUF815232-291 aa
PF00004AAA234-363 aa
PF13086AAA_11234-255 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G032780PF14363AAA_assoc151121.2e-2177.7
TkA08G032780PF13479AAA_241922320.01315.9
TkA08G032780PF13191AAA_162242600.0002122.6
TkA08G032780PF13555AAA_292312550.01216.0
TkA08G032780PF12775AAA_72312780.08713.1
TkA08G032780PF05673DUF8152322910.0009419.1
TkA08G032780PF00004AAA2343634.5e-2073.2
TkA08G032780PF13086AAA_112342550.0003621.1
TkA08G032780PF05496RuvB_N2342920.002418.4
TkA08G032780PF13401AAA_222342750.002718.7
TkA08G032780PF13479AAA_242342550.01315.9
TkA08G032780PF20030bpMoxR2342660.01914.8
TkA08G032780PF02463SMC_N2342580.08113.1
TkA08G032780PF01078Mg_chelatase2342700.1312.3
TkA08G032780PF07728AAA_52352590.004217.8
TkA08G032780PF20720nSTAND32353000.009316.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9FKM3Arabidopsis thalianasp|Q9FKM3|AATPK_ARATH AAA-ATPase At5g5748068.900%Swiss-ProtHigh
Q8RY66Arabidopsis thalianasp|Q8RY66|AATPD_ARATH AAA-ATPase At4g2583569.700%Swiss-ProtHigh
F4JPK8Arabidopsis thalianasp|F4JPK8|AATPE_ARATH AAA-ATPase At4g3025067.900%Swiss-ProtHigh
Q9FLD5Arabidopsis thalianasp|Q9FLD5|ASD_ARATH AAA-ATPase ASD, mitochondrial42.800%Swiss-ProtMedium
Q9LJJ7Arabidopsis thalianasp|Q9LJJ7|AATP9_ARATH AAA-ATPase At3g2858042.900%Swiss-ProtMedium

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