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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G029480
Reference: TK1151 Chr: Chr08 Coordinates: 7535090-7536412 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1260 bp · TkA08G029480|TK1151|cDNA

ATGGATCGGAAAGTCCTTCTTTCACCGTACATAAGGCCGTATTTTTACAGTCAGCCACCACTTCCTCCTCCTCCGCCGCCACCAGTGCCGTTTCAACCCACCACCGCCAGCTCAAACTTAAACAACAATGTGAGTCCAAGTGTTCTCCTAATCATCATAATCCTCGCCGTTATTTTCTTCATCTCCGGATTGCTTCATCTCCTCGTTAGATTCCTCGTAAAACCATCAAACAGAGACCCAGATGAATTCGACAATGTGAC...

CDS

Download CDS FASTA

1260 bp · TkA08G029480|TK1151|CDS

ATGGATCGGAAAGTCCTTCTTTCACCGTACATAAGGCCGTATTTTTACAGTCAGCCACCACTTCCTCCTCCTCCGCCGCCACCAGTGCCGTTTCAACCCACCACCGCCAGCTCAAACTTAAACAACAATGTGAGTCCAAGTGTTCTCCTAATCATCATAATCCTCGCCGTTATTTTCTTCATCTCCGGATTGCTTCATCTCCTCGTTAGATTCCTCGTAAAACCATCAAACAGAGACCCAGATGAATTCGACAATGTGAC...

Protein

Download Protein FASTA

419 aa · TkA08G029480|TK1151|PROTEIN

MDRKVLLSPYIRPYFYSQPPLPPPPPPPVPFQPTTASSNLNNNVSPSVLLIIIILAVIFFISGLLHLLVRFLVKPSNRDPDEFDNVTALQGQLQQLFTLHDSGVDQSFIDTLPVFTYKSITGVKNPFDCAVCLCEFEGDDQLRLLPKCSHAFHTDCIDTWLLSHSTCPICRSNLLSDYSANPFCSPFVLVLESGSSESSREIEPTIQRTEVKEEENKEKVVTVKLGKFKNVDVAAASGGEKSNIDERRCFSMGSFEYVMD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA08G029480
TK1151 IDTkA08G029480
OH-1004 IDLXL04_018073
Relationship / confidenceRbh Sequence Supported / Probable
Protein identity (%)95.200
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G029480
LocationChr08:7535090-7536412 (+)
DescriptionSimilar to ATL49: Putative RING-H2 finger protein ATL49
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g30400 RING-H2 finger protein ATL13. No verified direct reference in this release
At2g18650 May be involved in female gametophyte development. No verified direct reference in this release
At5g40250 RING-H2 finger protein ATL46. No verified direct reference in this release
At1g23980 RING-H2 finger protein ATL47. No verified direct reference in this release
At5g57750 Putative RING-H2 finger protein ATL50. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_018073 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009793 embryo development ending in seed dormancy Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0005634 nucleus Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0016020 membrane Cellular Component
GO:0008270 zinc ion binding Molecular Function
GO:0061630 ubiquitin protein ligase activity Molecular Function
KEGG gene cross-reference
ath:AT1G23980
ath:AT2G18650
ath:AT4G30400
ath:AT5G40250
ath:AT5G57750
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.356
Rank 1 · TkA08G029480 · TK1151
Nucleus0.318
Rank 2 · TkA08G029480 · TK1151
Cytoplasm0.278
Rank 3 · TkA08G029480 · TK1151
Endoplasmic reticulum0.149
Rank 4 · TkA08G029480 · TK1151
Lysosome / Vacuole0.075
Rank 5 · TkA08G029480 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF16101PRIMA118-68 aa
PF13813MBOAT_247-76 aa
PF23413zf_RING_Vps8_fungal123-132 aa
PF12678zf-rbx1124-171 aa
PF04641Rtf2124-262 aa
PF12861zf-ANAPC11125-173 aa
PF11793FANCL_C127-187 aa
PF13639zf-RING_2128-171 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G029480PF16101PRIMA118680.04514.3
TkA08G029480PF13813MBOAT_247760.01816.0
TkA08G029480PF23413zf_RING_Vps8_fungal1231320.06413.3
TkA08G029480PF12678zf-rbx11241713.8e-1040.6
TkA08G029480PF04641Rtf21242620.01415.4
TkA08G029480PF12861zf-ANAPC111251735.5e-0833.5
TkA08G029480PF11793FANCL_C1271870.0913.8
TkA08G029480PF13639zf-RING_21281712.6e-1453.9
TkA08G029480PF17123zf-RING_111281576.5e-1039.3
TkA08G029480PF14446Prok-RING_11281574.88.1
TkA08G029480PF21202SLX1_C1281735.88.0
TkA08G029480PF13923zf-C3HC4_21291709e-0626.1
TkA08G029480PF13445zf-RING_UBOX1291683.9e-0524.3
TkA08G029480PF14634zf-RING_51291710.0001122.8
TkA08G029480PF00097zf-C3HC41291700.0001322.4
TkA08G029480PF13920zf-C3HC4_31291730.02615.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q940Q4Arabidopsis thalianasp|Q940Q4|ATL13_ARATH RING-H2 finger protein ATL1349.800%Swiss-ProtMedium
Q9ZV53Arabidopsis thalianasp|Q9ZV53|ATL49_ARATH Putative RING-H2 finger protein ATL4947.600%Swiss-ProtMedium
Q9FL07Arabidopsis thalianasp|Q9FL07|ATL46_ARATH RING-H2 finger protein ATL4644.700%Swiss-ProtMedium
Q8GW38Arabidopsis thalianasp|Q8GW38|ATL47_ARATH RING-H2 finger protein ATL4740.400%Swiss-ProtMedium
Q9FHG8Arabidopsis thalianasp|Q9FHG8|ATL50_ARATH Putative RING-H2 finger protein ATL5046.300%Swiss-ProtLow

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