TkA08G028680 | RubberDandelionOmics

Gene overview

TkA08G028680

Reference: TK1151 Chr: Chr08 Coordinates: 7375695-7376727 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

693 bp · TkA08G028680|TK1151|cDNA

ATGTCGCGACCTCCTTCTTCCCCATCGCGATACCCTGTTGTTCGCTGCCCATCTCTCCCGTCGCTCCTGGATGGCCGGACCTCCACCGGAGCCACTGTCAGATACAGCAAAGTTTACAGTAACGTCCGCCGTGATGTATTAGATGAGTGTTTATCAATTCTCGGTATGGAACGACACAGTATAGAAGAGATACAGCGAATCGAATGGAAGATCTTAGATGAAAAAGCTAAGAAATGGATTCTAGCTGTCAAAGCCGTAGT...

CDS

Download CDS FASTA

693 bp · TkA08G028680|TK1151|CDS

ATGTCGCGACCTCCTTCTTCCCCATCGCGATACCCTGTTGTTCGCTGCCCATCTCTCCCGTCGCTCCTGGATGGCCGGACCTCCACCGGAGCCACTGTCAGATACAGCAAAGTTTACAGTAACGTCCGCCGTGATGTATTAGATGAGTGTTTATCAATTCTCGGTATGGAACGACACAGTATAGAAGAGATACAGCGAATCGAATGGAAGATCTTAGATGAAAAAGCTAAGAAATGGATTCTAGCTGTCAAAGCCGTAGT...

Protein

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230 aa · TkA08G028680|TK1151|PROTEIN

MSRPPSSPSRYPVVRCPSLPSLLDGRTSTGATVRYSKVYSNVRRDVLDECLSILGMERHSIEEIQRIEWKILDEKAKKWILAVKAVVRVLLFGEKRLCEQVFNESELIQYICFVETTKGCVMQLLNFGEAVAIGERSSEKLFRILDMWCTDGGLAVVRWWSDSGPMCRWVQVVHRRWSGGGPMLVRRWSGGGGGPVVVRRWSDSGPMCRWVQVVHRRWSGGGCRWWSGGL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G028680`
TK1151 ID	TkA08G028680
OH-1004 ID	LXL04_001554
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	94.900
Protein coverage (%)	TK1151 77.391 / OH-1004 50.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA08G028680

Location Chr08:7375695-7376727 (-)

Description Similar to EXO70B1: Exocyst complex component EXO70B1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g58430`	Component of an exocyst subcomplex specifically involved in autophagy-related, Golgi-independent membrane traffic to the vacuole.	Arabidopsis exocyst subcomplex containing subunit EXO70B1 is involved in autophagy-related transport to the vacuole.2013 · DOI: 10.1111/tra.12101 The N-Terminal UND Motif of the Arabidopsis U-Box E3 Ligase PUB18 Is Critical for the Negative Regulation of ABA-Mediated Stomatal Movement and Determines Its Ubiquitination Specificity for Exocyst Subunit Exo70B1.2016 · DOI: 10.1105/tpc.16.00347
`At5g03540`	Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane during regulated or polarized secretion.	AtEXO70A1, a member of a family of putative exocyst subunits specifically expanded in land plants, is important for polar growth and plant development.2006 · DOI: 10.1111/j.1365-313x.2006.02854.x Arabidopsis exocyst subunits SEC8 and EXO70A1 and exocyst interactor ROH1 are involved in the localized deposition of seed coat pectin.2010 · DOI: 10.1111/j.1469-8137.2010.03372.x The Arabidopsis exocyst complex is involved in cytokinesis and cell plate maturation.2010 · DOI: 10.1105/tpc.110.074351 The exocyst complex contributes to PIN auxin efflux carrier recycling and polar auxin transport in Arabidopsis.2013 · DOI: 10.1111/tpj.12074 EXO70A1-mediated vesicle trafficking is critical for tracheary element development in Arabidopsis.2013 · DOI: 10.1105/tpc.113.112144 Microtubule-dependent targeting of the exocyst complex is necessary for xylem development in Arabidopsis.2017 · DOI: 10.1111/nph.14267
`At1g07000`	Component of an exocyst subcomplex specifically involved in autophagy-related, Golgi-independent membrane traffic to the vacuole.	The role for the exocyst complex subunits Exo70B2 and Exo70H1 in the plant-pathogen interaction.2011 · DOI: 10.1093/jxb/erq402 The ubiquitin ligase PUB22 targets a subunit of the exocyst complex required for PAMP-triggered responses in Arabidopsis.2012 · DOI: 10.1105/tpc.112.104463 The N-Terminal UND Motif of the Arabidopsis U-Box E3 Ligase PUB18 Is Critical for the Negative Regulation of ABA-Mediated Stomatal Movement and Determines Its Ubiquitination Specificity for Exocyst Subunit Exo70B1.2016 · DOI: 10.1105/tpc.16.00347
`At3g55150`	Component of an exocyst subcomplex specifically involved in autophagy-related, Golgi-independent membrane traffic to the vacuole.	The role for the exocyst complex subunits Exo70B2 and Exo70H1 in the plant-pathogen interaction.2011 · DOI: 10.1093/jxb/erq402
`At5g13150`	Required for global plant growth and for male transmission.	Expression and functional analyses of EXO70 genes in Arabidopsis implicate their roles in regulating cell type-specific exocytosis.2010 · DOI: 10.1104/pp.110.164178 EXO70C2 Is a Key Regulatory Factor for Optimal Tip Growth of Pollen.2017 · DOI: 10.1104/pp.16.01282

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_001554 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000919 cell plate assembly Biological Process

GO:0002237 response to molecule of bacterial origin Biological Process

GO:0002238 response to molecule of fungal origin Biological Process

GO:0006887 exocytosis Biological Process

GO:0006952 defense response Biological Process

GO:0006955 immune response Biological Process

GO:0009414 response to water deprivation Biological Process

GO:0009617 response to bacterium Biological Process

GO:0009620 response to fungus Biological Process

GO:0009630 gravitropism Biological Process

GO:0009734 auxin-activated signaling pathway Biological Process

GO:0009789 positive regulation of abscisic acid-activated signaling pathway Biological Process

KEGG gene cross-reference

ath:AT1G07000

ath:AT5G03540

ath:AT5G52350

ath:AT5G58430

ath:AT5G61010

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.485

Rank 1 · TkA08G028680 · TK1151

Nucleus0.314

Rank 2 · TkA08G028680 · TK1151

Cell membrane0.165

Rank 3 · TkA08G028680 · TK1151

Endoplasmic reticulum0.099

Rank 4 · TkA08G028680 · TK1151

Golgi apparatus0.090

Rank 5 · TkA08G028680 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF28618MTOPVIB_C47-71 aa

PF22929INTS1_INTS2-bd66-104 aa

PF03081Exo70_C77-147 aa

PF22929INTS1_INTS2-bd121-181 aa

PF08263LRRNT_2160-172 aa

PF22929INTS1_INTS2-bd199-222 aa

PF08263LRRNT_2199-213 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G028680	`PF28618`	MTOPVIB_C	47	71	0.31	11.8
TkA08G028680	`PF22929`	INTS1_INTS2-bd	66	104	2.5e-05	24.4
TkA08G028680	`PF03081`	Exo70_C	77	147	2e-17	64.0
TkA08G028680	`PF22929`	INTS1_INTS2-bd	121	181	2.5e-05	24.4
TkA08G028680	`PF08263`	LRRNT_2	160	172	2.2	9.4
TkA08G028680	`PF22929`	INTS1_INTS2-bd	199	222	2.5e-05	24.4
TkA08G028680	`PF08263`	LRRNT_2	199	213	2.2	9.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FGH9`	Arabidopsis thaliana	sp\|Q9FGH9\|E70B1_ARATH Exocyst complex component EXO70B1	41.700%	Swiss-Prot	Medium
`Q9LZD3`	Arabidopsis thaliana	sp\|Q9LZD3\|E70A1_ARATH Exocyst complex component EXO70A1	37.100%	Swiss-Prot	Medium
`Q9LMJ4`	Arabidopsis thaliana	sp\|Q9LMJ4\|E70B2_ARATH Exocyst complex component EXO70B2	36.400%	Swiss-Prot	Medium
`Q8VY27`	Arabidopsis thaliana	sp\|Q8VY27\|E70H1_ARATH Exocyst complex component EXO70H1	33.300%	Swiss-Prot	Medium
`Q9FY95`	Arabidopsis thaliana	sp\|Q9FY95\|E70C1_ARATH Exocyst complex component EXO70C1	33.600%	Swiss-Prot	Medium

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