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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G026460
Reference: TK1151 Chr: Chr08 Coordinates: 6828472-6830550 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1729 bp · TkA08G026460|TK1151|cDNA

CAAAAGTCGTGTTATCGTTAGGCTTTTGAGACTAGCAAAATTATCGTACAACCTAAACCCAAAATCGGTATCTGTTTTTGGTTCCGATAAGACAAAACAGCAAACAGTTACGATACGCAAAGATTTCTGGATTCATCGTCTTTTACTTTTACTTTTTGTTCACTTGAATCGGATTTCAATACAAGTTTGATCGGATTCAATGATCGAATCTCCACTACAATTCTTTTCTGAACACCTCTCTGTTCATCTTCAAATTTGAA...

CDS

Download CDS FASTA

1071 bp · TkA08G026460|TK1151|CDS

ATGAATCTTAAAATGATGGAAAACAACACGGATACAACAATCTCAATCGAAGAACCCAGCAAATCATTAAAAGAAACCCTACGTGCTCAACAACAACTTCTTCAAAAACTCTACAATGAACTAGATGTAGAACGAGAAGCCTCTTCATCAGCCGCCAGTGAAGCACTAGCCATGATTCTTCGCCTTCAAGGAGAAAAAGCATCTGTAAAAATGGAATCCGAACACTACAAAAGGTTAGCAGAAGAGAAAATGTGTTACGC...

Protein

Download Protein FASTA

356 aa · TkA08G026460|TK1151|PROTEIN

MNLKMMENNTDTTISIEEPSKSLKETLRAQQQLLQKLYNELDVEREASSSAASEALAMILRLQGEKASVKMESEHYKRLAEEKMCYAEESMNIFEEQIHQREMEIASLDCQLQAYRYKLQSLGFVDNETSSLSRRNSAPPKLLKLAYLYRNRSTSPDSDLGEDEIHQNADSERQSYWDQIRKLDKIVEEMTDDEHIKLSGKSSHFNEIEQVQNVHDVFEVPEINNDVKGNGKLIMEGESKFEKVLVFPEEAISMLVLKQK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G026460
TK1151 IDTkA08G026460
OH-1004 IDLXL04_002838
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)40.700
Protein coverage (%)TK1151 98.596 / OH-1004 99.781
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G026460
LocationChr08:6828472-6830550 (+)
DescriptionSimilar to MYOB7: Myosin-binding protein 7
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g74830 Probable membrane-anchored myosin receptors. No verified direct reference in this release
At1g18990 Probable membrane-anchored myosin receptors. No verified direct reference in this release
At1g70750 Membrane-anchored myosin receptors that define a distinct, plant-specific transport vesicle compartment. No verified direct reference in this release
At5g16720 Membrane-anchored myosin receptors that define a distinct, plant-specific transport vesicle compartment. No verified direct reference in this release
At2g30690 Membrane-anchored myosin receptors that define a distinct, plant-specific transport vesicle compartment. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_002838 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005794 Golgi apparatus Cellular Component
GO:0005811 lipid droplet Cellular Component
GO:0012505 endomembrane system Cellular Component
GO:0016020 membrane Cellular Component
GO:0030133 transport vesicle Cellular Component
GO:0017022 myosin binding Molecular Function
GO:0080115 myosin XI tail binding Molecular Function
KEGG gene cross-reference
ath:AT1G70750
ath:AT1G74830
ath:AT2G30690
ath:AT5G06560
ath:AT5G16720
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.580
Rank 1 · TkA08G026460 · TK1151
Nucleus0.377
Rank 2 · TkA08G026460 · TK1151
Cell membrane0.137
Rank 3 · TkA08G026460 · TK1151
Golgi apparatus0.064
Rank 4 · TkA08G026460 · TK1151
Endoplasmic reticulum0.055
Rank 5 · TkA08G026460 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13467RHH_411-62 aa
PF26138DUF804019-81 aa
PF05531NPV_P1021-41 aa
PF04576Zein-binding22-112 aa
PF04102SlyX22-42 aa
PF24590DUF761524-96 aa
PF13467RHH_460-98 aa
PF20203DUF656563-63 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G026460PF13467RHH_411620.1413.0
TkA08G026460PF26138DUF804019810.113.2
TkA08G026460PF05531NPV_P1021416.78.0
TkA08G026460PF04576Zein-binding221121.4e-31109.4
TkA08G026460PF04102SlyX22420.04915.0
TkA08G026460PF24590DUF761524960.02415.8
TkA08G026460PF13467RHH_460980.1413.0
TkA08G026460PF20203DUF656563634.28.8
TkA08G026460PF24590DUF7615681210.02415.8
TkA08G026460PF04102SlyX811400.04915.0
TkA08G026460PF20203DUF6565861264.28.8
TkA08G026460PF13467RHH_41651850.1413.0
TkA08G026460PF04102SlyX1771920.04915.0
TkA08G026460PF20203DUF65651772364.28.8
TkA08G026460PF05531NPV_P101832246.78.0
TkA08G026460PF24590DUF76151901900.02415.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
F4HVS6Arabidopsis thalianasp|F4HVS6|MYOB6_ARATH Probable myosin-binding protein 640.200%Swiss-ProtLow
Q9LMC8Arabidopsis thalianasp|Q9LMC8|MYOB5_ARATH Probable myosin-binding protein 528.400%Swiss-ProtLow
Q9CAC4Arabidopsis thalianasp|Q9CAC4|MYOB2_ARATH Myosin-binding protein 235.700%Swiss-ProtLow
Q0WNW4Arabidopsis thalianasp|Q0WNW4|MYOB3_ARATH Myosin-binding protein 353.600%Swiss-ProtLow
F4INW9Arabidopsis thalianasp|F4INW9|MYOB4_ARATH Probable myosin-binding protein 436.500%Swiss-ProtLow

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