TkA08G021000 | RubberDandelionOmics

Gene overview

TkA08G021000

Reference: TK1151 Chr: Chr08 Coordinates: 5264225-5264804 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

501 bp · TkA08G021000|TK1151|cDNA

ATGGAATCTATTAATGAACTTGTCCAAAAAGCACTTGCTAGATCATTAAGCTTAGAGGAGAATTGTTTCTTGGATCAATATGGGACAAATGGAGCAATGATTGCAAAATATAACTACTACCCTCCATGTCAATGGCCTGAAAAAGTGTTGGGAGACAAACCACATGGAGATGGATCAGCGATCACAGTTTTGTTGCAGGACAAAGAGGTTGAAGGGCTTCAAATCTTGAAAGATGGTCAGTGGGTTGGAGTTCCTATTGT...

CDS

Download CDS FASTA

501 bp · TkA08G021000|TK1151|CDS

ATGGAATCTATTAATGAACTTGTCCAAAAAGCACTTGCTAGATCATTAAGCTTAGAGGAGAATTGTTTCTTGGATCAATATGGGACAAATGGAGCAATGATTGCAAAATATAACTACTACCCTCCATGTCAATGGCCTGAAAAAGTGTTGGGAGACAAACCACATGGAGATGGATCAGCGATCACAGTTTTGTTGCAGGACAAAGAGGTTGAAGGGCTTCAAATCTTGAAAGATGGTCAGTGGGTTGGAGTTCCTATTGT...

Protein

Download Protein FASTA

166 aa · TkA08G021000|TK1151|PROTEIN

MESINELVQKALARSLSLEENCFLDQYGTNGAMIAKYNYYPPCQWPEKVLGDKPHGDGSAITVLLQDKEVEGLQILKDGQWVGVPIVPDALTINVGDQFEVMSNGIFKSVVHRVLVDSKNERMTIGPVDGLITDETPKLYKNVTFTNEFFFENYNQGRRATDACKI

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G021000`
TK1151 ID	TkA08G021000
OH-1004 ID	LXL04_018196
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	80.300
Protein coverage (%)	TK1151 100.000 / OH-1004 45.641 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA08G021000

Location Chr08:5264225-5264804 (-)

Description Similar to SRG1: Protein SRG1

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g24530`	Converts salicylic acid (SA) to 2,3-dihydroxybenzoic acid (2,3-DHBA) (By similarity).	Identification of arabidopsis loci required for susceptibility to the downy mildew pathogen Hyaloperonospora parasitica.2005 · DOI: 10.1094/mpmi-18-0583 Arabidopsis DMR6 encodes a putative 2OG-Fe(II) oxygenase that is defense-associated but required for susceptibility to downy mildew.2008 · DOI: 10.1111/j.1365-313x.2008.03427.x DOWNY MILDEW RESISTANT 6 and DMR6-LIKE OXYGENASE 1 are partially redundant but distinct suppressors of immunity in Arabidopsis.2015 · DOI: 10.1111/tpj.12719
`At1g17020`	Protein SRG1.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os10g0536400`	Catalyzes the 3-beta-hydroxylation of 2S-flavanones to 2R,3R- dihydroflavonols which are intermediates in the biosynthesis of flavonols, anthocyanidins, catechins and proanthocyanidins in plants.	Flavanone 3beta-hydroxylases from rice: key enzymes for favonol and anthocyanin biosynthesis.2008 · DOI: 10.1016/s1016-8478(23)17587-x

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_018196 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0002238 response to molecule of fungal origin Biological Process

GO:0009805 coumarin biosynthetic process Biological Process

GO:0010150 leaf senescence Biological Process

GO:0032259 methylation Biological Process

GO:0097295 morphine biosynthetic process Biological Process

GO:1901601 strigolactone biosynthetic process Biological Process

GO:2000032 regulation of secondary shoot formation Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0008168 methyltransferase activity Molecular Function

GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor Molecular Function

GO:0016706 2-oxoglutarate-dependent dioxygenase activity Molecular Function

GO:0030782 (S)-tetrahydroprotoberberine N-methyltransferase activity Molecular Function

KEGG gene cross-reference

ag:ADD85331

ath:AT1G17020

ath:AT3G21420

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.754

Rank 1 · TkA08G021000 · TK1151

Nucleus0.226

Rank 2 · TkA08G021000 · TK1151

Endoplasmic reticulum0.064

Rank 3 · TkA08G021000 · TK1151

Peroxisome0.055

Rank 4 · TkA08G021000 · TK1151

Mitochondrion0.041

Rank 5 · TkA08G021000 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF031712OG-FeII_Oxy33-125 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G021000	`PF03171`	2OG-FeII_Oxy	33	125	3.9e-29	101.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FLV0`	Arabidopsis thaliana	sp\|Q9FLV0\|DMR6_ARATH Protein DOWNY MILDEW RESISTANCE 6	38.300%	Swiss-Prot	Medium
`Q39224`	Arabidopsis thaliana	sp\|Q39224\|SRG1_ARATH Protein SRG1	33.700%	Swiss-Prot	Medium
`Q8W2X5`	Oryza sativa subsp. japonica	sp\|Q8W2X5\|FL3H2_ORYSJ Flavanone 3-dioxygenase 2	39.500%	Swiss-Prot	Medium

JBrowse

View in Genome Browser

Gene Card