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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G013570
Reference: TK1151 Chr: Chr08 Coordinates: 3325288-3328144 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1396 bp · TkA08G013570|TK1151|cDNA

TATATGACCCCGACTAGAATTTCGGCTTAAATAACAAGCGGAACATTTACGCTAATCTTTGAGGGATCAGCGTCAACTCAAAGCTAGAATATCTGCATAGCCTTCTTCCTATCCACTATAAATACATAAACCAAACTCCAAGCAATCAATCAACATTGTTTACAGTACGCGGATCAAAATCCACACCCATATTCGATGGCTCTACCAAATCAACAGACGGTTGATTACCCAAGCTTTAAGCTGGTGATTGTTGGCGATGG...

CDS

Download CDS FASTA

750 bp · TkA08G013570|TK1151|CDS

ATGGCTCTACCAAATCAACAGACGGTTGATTACCCAAGCTTTAAGCTGGTGATTGTTGGCGATGGAGGAACGGGCAAGACTACCTTTGTCAAAAGGCATCTCACTGGTGAATTCGAGAAGAAGTATGAACCTACTATTGGAGTCGAAGTTCACCCACTAGATTTCTTCACAAACATGGGAAAGATCCGTTTCTATTGCTGGGATACTGCAGGCCAGGAGAAGTTTGGTGGTCTTCGAGATGGCTACTACATCCATGGGCA...

Protein

Download Protein FASTA

249 aa · TkA08G013570|TK1151|PROTEIN

MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNMGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFCTLLESLLGMQTFILWSHLPLHLQRSKLIGQPNNCMKRSLLRPPTSRYLMTMMMHLIKCFHTLYIYIYIYIFHICVNIFDLFMWF

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G013570
TK1151 IDTkA08G013570
OH-1004 IDLXL04_004057
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)60.200
Protein coverage (%)TK1151 51.406 / OH-1004 35.072
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G013570
LocationChr08:3325288-3328144 (+)
DescriptionSimilar to RAN3: GTP-binding nuclear protein Ran-3
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g20010 GTP-binding protein involved in nucleocytoplasmic transport. No verified direct reference in this release
At5g20020 GTP-binding protein involved in nucleocytoplasmic transport. No verified direct reference in this release
At5g55190 GTP-binding protein involved in nucleocytoplasmic transport. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_004057 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000054 ribosomal subunit export from nucleus Biological Process
GO:0006606 protein import into nucleus Biological Process
GO:0042742 defense response to bacterium Biological Process
GO:0050832 defense response to fungus Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005794 Golgi apparatus Cellular Component
GO:0005829 cytosol Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0009505 plant-type cell wall Cellular Component
GO:0009506 plasmodesma Cellular Component
GO:0009536 plastid Cellular Component
KEGG gene cross-reference
ath:AT5G20010
ath:AT5G55190
nta:107779563
nta:107829920
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.493
Rank 1 · TkA08G013570 · TK1151
Nucleus0.257
Rank 2 · TkA08G013570 · TK1151
Endoplasmic reticulum0.142
Rank 3 · TkA08G013570 · TK1151
Mitochondrion0.122
Rank 4 · TkA08G013570 · TK1151
Golgi apparatus0.112
Rank 5 · TkA08G013570 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00025Arf13-139 aa
PF04665Pox_A3213-41 aa
PF00503G-alpha13-32 aa
PF00071Ras15-171 aa
PF08477Roc15-128 aa
PF13479AAA_2415-32 aa
PF01926MMR_HSR116-126 aa
PF03193RsgA_GTPase16-33 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G013570PF00025Arf131399.6e-1142.2
TkA08G013570PF04665Pox_A3213410.05813.6
TkA08G013570PF00503G-alpha13320.07612.9
TkA08G013570PF00071Ras151711.4e-47162.0
TkA08G013570PF08477Roc151281.5e-30106.5
TkA08G013570PF13479AAA_2415320.1112.9
TkA08G013570PF01926MMR_HSR1161260.0001822.3
TkA08G013570PF03193RsgA_GTPase16330.07413.6
TkA08G013570PF13401AAA_2216360.2712.3
TkA08G013570PF00910RNA_helicase171390.0002522.2
TkA08G013570PF06745ATPase17590.04613.8
TkA08G013570PF03029ATP_bind_118340.311.6
TkA08G013570PF00009GTP_EFTU391660.00218.4
TkA08G013570PF00503G-alpha44730.07612.9
TkA08G013570PF16487ArgoMid871380.1712.8
TkA08G013570PF13479AAA_24921130.1112.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
P41916Arabidopsis thalianasp|P41916|RAN1_ARATH GTP-binding nuclear protein Ran-195.400%Swiss-ProtHigh
P41917Arabidopsis thalianasp|P41917|RAN2_ARATH GTP-binding nuclear protein Ran-295.400%Swiss-ProtHigh
Q8H156Arabidopsis thalianasp|Q8H156|RAN3_ARATH GTP-binding nuclear protein Ran-396.000%Swiss-ProtMedium

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