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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G012120
Reference: TK1151 Chr: Chr08 Coordinates: 2966898-2967476 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

490 bp · TkA08G012120|TK1151|cDNA

GGCCCACTTCCAATGCACCCCTTCCCCTTCTTCACCAATCATAATCCACCACCTGGCACCATTATCCCTTATCCAAATCCAGCCAACTGCCATATCAATCAAACGGTTCCTGTATATAATGCACCTACCTCATGTAGTAGTTCAAGCAAAAAAGGGGAGAATTCTAGCGATGTGGTGACTGAATTAGAGCTTAAAACTCCGGGTTCTTCAAATAGTGTGGATAAAAAGGGAAAGAAACTAGAGAGGAAAGAGAAGAGTGG...

CDS

Download CDS FASTA

324 bp · TkA08G012120|TK1151|CDS

ATGCACCCCTTCCCCTTCTTCACCAATCATAATCCACCACCTGGCACCATTATCCCTTATCCAAATCCAGCCAACTGCCATATCAATCAAACGGTTCCTGTATATAATGCACCTACCTCATGTAGTAGTTCAAGCAAAAAAGGGGAGAATTCTAGCGATGTGGTGACTGAATTAGAGCTTAAAACTCCGGGTTCTTCAAATAGTGTGGATAAAAAGGGAAAGAAACTAGAGAGGAAAGAGAAGAGTGGTAGGTACACTTC...

Protein

Download Protein FASTA

107 aa · TkA08G012120|TK1151|PROTEIN

MHPFPFFTNHNPPPGTIIPYPNPANCHINQTVPVYNAPTSCSSSSKKGENSSDVVTELELKTPGSSNSVDKKGKKLERKEKSGRYTSSQVFEDSSSNSVVNNGESND

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA08G012120
TK1151 IDTkA08G012120
OH-1004 IDLXL04_007269
Relationship / confidenceSequence Supported Annotation Or Model Conflict / Review
Protein identity (%)98.100
Protein coverage (%)TK1151 100.000 / OH-1004 29.477
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G012120
LocationChr08:2966898-2967476 (-)
DescriptionSimilar to BHLH121: Transcription factor bHLH121
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_007269 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006351 DNA-templated transcription Biological Process
GO:0006355 regulation of DNA-templated transcription Biological Process
GO:0006879 intracellular iron ion homeostasis Biological Process
GO:0010039 response to iron ion Biological Process
GO:0019760 glucosinolate metabolic process Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0000976 transcription cis-regulatory region binding Molecular Function
GO:0003677 DNA binding Molecular Function
GO:0003700 DNA-binding transcription factor activity Molecular Function
GO:0046983 protein dimerization activity Molecular Function
GO:1990837 sequence-specific double-stranded DNA binding Molecular Function
KEGG gene cross-reference
ath:AT3G19860
ath:AT4G36060
ath:AT5G54680
dosa:Os03g0379300
dosa:Os07g0628500
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.940
Rank 1 · TkA08G012120 · TK1151
Cytoplasm0.150
Rank 2 · TkA08G012120 · TK1151
Cell membrane0.032
Rank 3 · TkA08G012120 · TK1151
Endoplasmic reticulum0.018
Rank 4 · TkA08G012120 · TK1151
Mitochondrion0.011
Rank 5 · TkA08G012120 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

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