TkA08G006660 | RubberDandelionOmics

Gene overview

TkA08G006660

Reference: TK1151 Chr: Chr08 Coordinates: 1690317-1692309 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1221 bp · TkA08G006660|TK1151|cDNA

AAAAAATGTTAAATCGGTCAAAACCTAAATAAAAAGCAGATTCCAATTATGTAATGAAACAGGCTGAAAGCCAGATAGCGGGAGCCAAGGTGGATTCCTGACACTATAAATACAAAGGAAGCTGAGGAACACCAAATCCCTACTACCAAAAAACCGCTGGCCCTCTTCCACATCTCTCTCTCTCTTCTTTGTGTAGAACACTAAAGAAATTGAAGATTCTGAGAAGAAATTCAACATTCTGTGCAATCGCAGACGTAGGT...

CDS

Download CDS FASTA

537 bp · TkA08G006660|TK1151|CDS

ATGCAAGTAAAAGCTAATGCACAGGCACCCACAGAGGTAAACGGTACTAGAGTTAGACTCATGAATGGCAGCATCAAAACCGATGATAGTAATCTCACATCACATGCCCCAAGAACATTCATAAACCAGTTACCTGATTGGAGCATGCTTCTTGCTGCAATCACCACAATCTTCTTAGCTGCTGAAAAACAATGGATGATGCTCGAATGGAAGACCAAAAGACCAGACATGCTTTCTGATCTTGATCCTTTTGGTTTAGG...

Protein

Download Protein FASTA

178 aa · TkA08G006660|TK1151|PROTEIN

MQVKANAQAPTEVNGTRVRLMNGSIKTDDSNLTSHAPRTFINQLPDWSMLLAAITTIFLAAEKQWMMLEWKTKRPDMLSDLDPFGLGRIVQDGLVFRQNFSIRSYEIGADRTASIETLMNHFQETALNHVKTAGLLGDGFGSTPEMCKKNLFWVVTKMQVMVDRYPTWYVISYFIYNL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G006660`
TK1151 ID	TkA08G006660
OH-1004 ID	LXL04_018309
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	100.000
Protein coverage (%)	TK1151 94.382 / OH-1004 39.623 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA08G006660

Location Chr08:1690317-1692309 (+)

Description Similar to FATB1: Palmitoyl-acyl carrier protein thioesterase, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g08510`	Plays an essential role in chain termination during de novo fatty acid synthesis.	Accumulation of palmitate in Arabidopsis mediated by the acyl-acyl carrier protein thioesterase FATB1.2000 · DOI: 10.1104/pp.123.2.637 Characterization of substrate specificity of plant FatA and FatB acyl-ACP thioesterases.2002 · DOI: 10.1016/s0003-9861(02)00017-6 Disruption of the FATB gene in Arabidopsis demonstrates an essential role of saturated fatty acids in plant growth.2003 · DOI: 10.1105/tpc.008946 A structural model of the plant acyl-acyl carrier protein thioesterase FatB comprises two helix/4-stranded sheet domains, the N-terminal domain containing residues that affect specificity and the C-terminal domain containing catalytic residues.2005 · DOI: 10.1074/jbc.m411351200 A MYB transcription factor regulates very-long-chain fatty acid biosynthesis for activation of the hypersensitive cell death response in Arabidopsis.2008 · DOI: 10.1105/tpc.107.054858

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_018309 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006633 fatty acid biosynthetic process Biological Process

GO:0009507 chloroplast Cellular Component

GO:0009536 plastid Cellular Component

GO:0000036 acyl carrier activity Molecular Function

GO:0016297 fatty acyl-[ACP] hydrolase activity Molecular Function

KEGG gene cross-reference

ath:AT1G08510

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.278

Rank 1 · TkA08G006660 · TK1151

Cytoplasm0.254

Rank 2 · TkA08G006660 · TK1151

Mitochondrion0.229

Rank 3 · TkA08G006660 · TK1151

Cell membrane0.137

Rank 4 · TkA08G006660 · TK1151

Endoplasmic reticulum0.107

Rank 5 · TkA08G006660 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF12590Acyl-thio_N1-80 aa

PF18645DUF56315-57 aa

PF01643Acyl-ACP_TE41-71 aa

PF01643Acyl-ACP_TE93-168 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G006660	`PF12590`	Acyl-thio_N	1	80	1.6e-38	132.9
TkA08G006660	`PF18645`	DUF5631	5	57	0.2	12.9
TkA08G006660	`PF01643`	Acyl-ACP_TE	41	71	1.9e-19	70.4
TkA08G006660	`PF01643`	Acyl-ACP_TE	93	168	1.9e-19	70.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SJE2`	Arabidopsis thaliana	sp\|Q9SJE2\|FATB_ARATH Palmitoyl-acyl carrier protein thioesterase, chloroplastic	77.800%	Swiss-Prot	High

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