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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G003600
Reference: TK1151 Chr: Chr08 Coordinates: 926669-929521 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2326 bp · TkA08G003600|TK1151|cDNA

AAAAATAATCGAAAGAAAAAGGATTCCAATTCCTTCTAATTGTTGAGTTTGGTTGGCAAAAAGAATCCTAAATAATGAAAACTTTCCTTCCAATGTCACAAGATTAAAGGAATTAATTCCTTTGTAAGAAGGAAAGTAACAAATGATGAAACAGATCAATTAACAAAAACCCTATACAGCAAAACATCGGTCGATATCCATCGCATTGCTGTTTCTTCCTCGCTGCTTCACGACCTCCATCGCTGGCTTCTTCACGCCTG...

CDS

Download CDS FASTA

1644 bp · TkA08G003600|TK1151|CDS

ATGATGATGAAGGGGTCTCAAATCTCAAGGAAAATTCATGTGAGCTACTACTCCACTACTAAATCTGGCGCCCACCCTTCACACCACCACCTCTCCACCATGGAATCCAAATCCCAACTCCTGAAATCGTACACTGTTACACCCCCGATCAAACCTTGGCCCCAAAAACTCTACCCTAAACGCCTTGTATCCATCATCACCCGGCAACAAAACCTGGACCTTGCCCTCCAAATCTTCTACCACGCTGGAAACTACCACCC...

Protein

Download Protein FASTA

547 aa · TkA08G003600|TK1151|PROTEIN

MMMKGSQISRKIHVSYYSTTKSGAHPSHHHLSTMESKSQLLKSYTVTPPIKPWPQKLYPKRLVSIITRQQNLDLALQIFYHAGNYHPGFEHNYETYHSIIHKLSRARAFEPVETLLSQLQKSHIKCGENLFIDVLRNYGLASRPKDSLRIFLRINEFGVTKSVRSLNTLLNILIQNRKYQLVHALFKNSQKKLNITPNVFTCNILLKAFCKNGDIEGAVKVLEEMPAMGMVPNVVSYTTVLGGYVWKGDMVGAKQMFDEI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G003600
TK1151 IDTkA08G003600
OH-1004 IDLXL04_026629
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)99.600
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G003600
LocationChr08:926669-929521 (-)
DescriptionSimilar to At5g16420: Pentatricopeptide repeat-containing protein At5g16420, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g16420 Pentatricopeptide repeat-containing protein At5g16420, mitochondrial. No verified direct reference in this release
At1g07740 Pentatricopeptide repeat-containing protein At1g07740, mitochondrial. No verified direct reference in this release
At5g18475 Pentatricopeptide repeat-containing protein At5g18475. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_026629 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006396 RNA processing Biological Process
GO:0007005 mitochondrion organization Biological Process
GO:0009793 embryo development ending in seed dormancy Biological Process
GO:0010239 chloroplast mRNA processing Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0042644 chloroplast nucleoid Cellular Component
GO:0003729 mRNA binding Molecular Function
KEGG gene cross-reference
ath:AT3G09060
ath:AT3G53700
ath:AT5G16420
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.813
Rank 1 · TkA08G003600 · TK1151
Plastid0.095
Rank 2 · TkA08G003600 · TK1151
Nucleus0.069
Rank 3 · TkA08G003600 · TK1151
Cytoplasm0.030
Rank 4 · TkA08G003600 · TK1151
Cell membrane0.011
Rank 5 · TkA08G003600 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF19189Mtf238-81 aa
PF13812PPR_362-79 aa
PF17177PPR_long69-126 aa
PF13812PPR_388-125 aa
PF13041PPR_294-126 aa
PF12921ATP1394-118 aa
PF08579RPM294-136 aa
PF12854PPR_195-103 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G003600PF19189Mtf238815.37.4
TkA08G003600PF13812PPR_362791.3e-38131.5
TkA08G003600PF17177PPR_long691261.8e-1764.1
TkA08G003600PF13812PPR_3881251.3e-38131.5
TkA08G003600PF13041PPR_2941264.9e-94309.0
TkA08G003600PF12921ATP13941180.0003921.0
TkA08G003600PF08579RPM2941360.03415.3
TkA08G003600PF12854PPR_1951034e-77254.3
TkA08G003600PF01535PPR951221.8e-62204.0
TkA08G003600PF29070MSC6_N952463.7e-2073.1
TkA08G003600PF23276TPR_241131774.5e-2279.1
TkA08G003600PF01535PPR1361591.8e-62204.0
TkA08G003600PF17177PPR_long1462801.8e-1764.1
TkA08G003600PF13812PPR_31531981.3e-38131.5
TkA08G003600PF06239ECSIT_N1541770.001518.6
TkA08G003600PF13041PPR_21622114.9e-94309.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9FFE3Arabidopsis thalianasp|Q9FFE3|PP388_ARATH Pentatricopeptide repeat-containing protein At5g16420, mitochondrial66.300%Swiss-ProtLow
Q9LQQ1Arabidopsis thalianasp|Q9LQQ1|PPR20_ARATH Pentatricopeptide repeat-containing protein At1g07740, mitochondrial28.300%Swiss-ProtLow
Q3E9F0Arabidopsis thalianasp|Q3E9F0|PP392_ARATH Pentatricopeptide repeat-containing protein At5g1847531.400%Swiss-ProtLow

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