TkA08G002220 | RubberDandelionOmics

Gene overview

TkA08G002220

Reference: TK1151 Chr: Chr08 Coordinates: 559782-563224 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2530 bp · TkA08G002220|TK1151|cDNA

GAAGGGGATGATATACGGAATTGACAGTGAATTAGTTTAAGTTGGAGGTGTGAGGAGGGGCATAAAAGGCAGCAAAAGTTAAGTAATAAGAACAAAACCCAACTACTCGGAAGGGTTTTCTTGCAGACGAGAGAGCACCAGCAGAAGCAGCAGCGAAAGAAATGAAGAAGATCACAACCTCAAAGCAAATCTGTTCCATGTCTGCTTCCTTGATTTAGAGACCCTTCTTCTTCTGCTTCTTCTTTCCTTTCAGATCTTGT...

CDS

Download CDS FASTA

1815 bp · TkA08G002220|TK1151|CDS

ATGGGCCAGTGCTACGGGAAGACAATTCCTACTAGCGACAACGACGGCCCCACCACCATCATCGCCGCCGGAGAGCAACAACGTACTTATCCTCAGTCTCCTTTCCCTTCATCTGCTAACAACGGCGTCATCCACGTCCCCTCCGTAAAAAACACGCCGGCCCGATCCTCGGCAGGGACGAGTCCATGGTCCAGTCCCTACCCTCACGGAATAGCCAGTCCATTACCGGCCGGGGTTTCGCCGTCTCCGGCGCGATCGTC...

Protein

Download Protein FASTA

604 aa · TkA08G002220|TK1151|PROTEIN

MGQCYGKTIPTSDNDGPTTIIAAGEQQRTYPQSPFPSSANNGVIHVPSVKNTPARSSAGTSPWSSPYPHGIASPLPAGVSPSPARSSTPGRRFFKRPFPPPSPAKHIKASLARRFGHAKQPREGPIPEDGAAVEPEVQSLDKNFGYNKNFGAKYELGKEIGRGHFGHTCHARGKKGELKDLALAVKIISKVKMTTAISIEDVRREVKILRALSGHKHLIHFYDACEDTNNVYIVMELCEGGELLDRILSRGGRYTETDAK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G002220`
TK1151 ID	TkA08G002220
OH-1004 ID	LXL04_026625
Relationship / confidence	Rbh High Identity Coverage Local Synteny Minor Chr Pair / Probable
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA08G002220

Location Chr08:559782-563224 (+)

Description Similar to CRK3: CDPK-related kinase 3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g46700`	May play a role in signal transduction pathways that involve calcium as a second messenger (By similarity).	No verified direct reference in this release
`At5g24430`	May play a role in signal transduction pathways that involve calcium as a second messenger.	No verified direct reference in this release
`At3g49370`	May play a role in signal transduction pathways that involve calcium as a second messenger.	No verified direct reference in this release
`At3g50530`	May play a role in signal transduction pathways that involve calcium as a second messenger.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_026625 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0010150 leaf senescence Biological Process

GO:0035556 intracellular signal transduction Biological Process

GO:0046777 protein autophosphorylation Biological Process

GO:0071215 cellular response to abscisic acid stimulus Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0004674 protein serine/threonine kinase activity Molecular Function

GO:0004683 calcium/calmodulin-dependent protein kinase activity Molecular Function

GO:0005509 calcium ion binding Molecular Function

GO:0005516 calmodulin binding Molecular Function

KEGG gene cross-reference

ath:AT2G46700

ath:AT3G49370

ath:AT3G50530

ath:AT5G24430

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.517

Rank 1 · TkA08G002220 · TK1151

Cytoplasm0.322

Rank 2 · TkA08G002220 · TK1151

Nucleus0.219

Rank 3 · TkA08G002220 · TK1151

Golgi apparatus0.060

Rank 4 · TkA08G002220 · TK1151

Endoplasmic reticulum0.056

Rank 5 · TkA08G002220 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069Pkinase154-416 aa

PF07714PK_Tyr_Ser-Thr155-406 aa

PF01636APH200-245 aa

PF03109ABC1228-316 aa

PF06293Kdo230-307 aa

PF14531Kinase-like257-366 aa

PF01636APH277-310 aa

PF13499EF-hand_7462-522 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G002220	`PF00069`	Pkinase	154	416	8.5e-70	235.8
TkA08G002220	`PF07714`	PK_Tyr_Ser-Thr	155	406	2.7e-32	112.8
TkA08G002220	`PF01636`	APH	200	245	0.031	14.8
TkA08G002220	`PF03109`	ABC1	228	316	3.2e-05	23.9
TkA08G002220	`PF06293`	Kdo	230	307	9.8e-06	25.9
TkA08G002220	`PF14531`	Kinase-like	257	366	0.00018	21.6
TkA08G002220	`PF01636`	APH	277	310	0.031	14.8
TkA08G002220	`PF13499`	EF-hand_7	462	522	0.0013	19.7
TkA08G002220	`PF13405`	EF-hand_6	462	486	0.0063	16.9
TkA08G002220	`PF00036`	EF-hand_1	463	486	0.0066	16.6
TkA08G002220	`PF00036`	EF-hand_1	513	522	0.0066	16.6
TkA08G002220	`PF13405`	EF-hand_6	514	522	0.0063	16.9
TkA08G002220	`PF13499`	EF-hand_7	542	563	0.0013	19.7
TkA08G002220	`PF13405`	EF-hand_6	542	561	0.0063	16.9
TkA08G002220	`PF00036`	EF-hand_1	542	560	0.0066	16.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9ZUZ2`	Arabidopsis thaliana	sp\|Q9ZUZ2\|CAMK3_ARATH CDPK-related kinase 3	71.500%	Swiss-Prot	High
`Q9FIM9`	Arabidopsis thaliana	sp\|Q9FIM9\|CAMK4_ARATH CDPK-related kinase 4	64.400%	Swiss-Prot	High
`Q9SG12`	Arabidopsis thaliana	sp\|Q9SG12\|CAMK6_ARATH CDPK-related kinase 6	64.600%	Swiss-Prot	High
`Q9SCS2`	Arabidopsis thaliana	sp\|Q9SCS2\|CAMK5_ARATH CDPK-related kinase 5	60.600%	Swiss-Prot	High

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