TkA08G001760 | RubberDandelionOmics

Gene overview

TkA08G001760

Reference: TK1151 Chr: Chr08 Coordinates: 444791-445377 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

347 bp · TkA08G001760|TK1151|cDNA

AGGTCCGGGTGATAATTGTTAAATTAGCAGACAGATTACATAACATGCGGACTCTTTCACATATGCCTTCACATAAGCAGTCCAGCATTGCAATGGAGACACTACAGGTGTTTGCTCCTCTTGCAAAACTCCTTGGAATGTACCAAATTAAGTCTGAGCTTGAGAACTTGTCCTTCATGTACACAAATCCTCAAGACTATGCTAAAGTGAAGAGAAGAGTTGTAGAGCTTTGTAAAGAACAGGAGAAAGAAATTGAAGAG...

CDS

Download CDS FASTA

303 bp · TkA08G001760|TK1151|CDS

ATGCGGACTCTTTCACATATGCCTTCACATAAGCAGTCCAGCATTGCAATGGAGACACTACAGGTGTTTGCTCCTCTTGCAAAACTCCTTGGAATGTACCAAATTAAGTCTGAGCTTGAGAACTTGTCCTTCATGTACACAAATCCTCAAGACTATGCTAAAGTGAAGAGAAGAGTTGTAGAGCTTTGTAAAGAACAGGAGAAAGAAATTGAAGAGGCAAATAAAATATTAATTAAGAAGATTGAAGATGATCAGTTCTT...

Protein

Download Protein FASTA

101 aa · TkA08G001760|TK1151|PROTEIN

MRTLSHMPSHKQSSIAMETLQVFAPLAKLLGMYQIKSELENLSFMYTNPQDYAKVKRRVVELCKEQEKEIEEANKILIKKIEDDQFLDLMTVNTEVRSVCK

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G001760`
TK1151 ID	TkA08G001760
OH-1004 ID	LXL04_037088
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	99.000
Protein coverage (%)	TK1151 100.000 / OH-1004 11.569 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA08G001760

Location Chr08:444791-445377 (-)

Description Similar to RSH1: Putative GTP diphosphokinase RSH1, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`UniProt: P0DKG8`	May be involved in a rapid plant ppGpp (guanosine 3'-diphosphate 5'-diphosphate)-mediated response to pathogens and other stresses.	No verified direct reference in this release
`At4g02260`	May be involved in a rapid plant ppGpp (guanosine 3'-diphosphate 5'-diphosphate)-mediated response to pathogens and other stresses (By similarity).	Expression profiling of four RelA/SpoT-like proteins, homologues of bacterial stringent factors, in Arabidopsis thaliana.2008 · DOI: 10.1007/s00425-008-0758-5

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0340900`	May be involved in a rapid plant ppGpp (guanosine 3'-diphosphate 5'-diphosphate)-mediated response to pathogens and other stresses.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_037088 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009611 response to wounding Biological Process

GO:0010150 leaf senescence Biological Process

GO:0015949 nucleobase-containing small molecule interconversion Biological Process

GO:0015969 guanosine tetraphosphate metabolic process Biological Process

GO:0015970 guanosine tetraphosphate biosynthetic process Biological Process

GO:0015979 photosynthesis Biological Process

GO:0042594 response to starvation Biological Process

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0005524 ATP binding Molecular Function

GO:0005525 GTP binding Molecular Function

GO:0008728 GTP diphosphokinase activity Molecular Function

KEGG gene cross-reference

ath:AT4G02260

bsu:BSU27600

dosa:Os03g0340900

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.456

Rank 1 · TkA08G001760 · TK1151

Nucleus0.455

Rank 2 · TkA08G001760 · TK1151

Mitochondrion0.095

Rank 3 · TkA08G001760 · TK1151

Cell membrane0.057

Rank 4 · TkA08G001760 · TK1151

Endoplasmic reticulum0.043

Rank 5 · TkA08G001760 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13328HD_41-32 aa

PF01756ACOX15-65 aa

PF13879Hmw_CFAP9748-82 aa

PF10957Spore_Cse6063-89 aa

PF13328HD_464-79 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G001760	`PF13328`	HD_4	1	32	0.00012	22.6
TkA08G001760	`PF01756`	ACOX	15	65	0.025	14.9
TkA08G001760	`PF13879`	Hmw_CFAP97	48	82	0.017	16.6
TkA08G001760	`PF10957`	Spore_Cse60	63	89	0.075	13.8
TkA08G001760	`PF13328`	HD_4	64	79	0.00012	22.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`P0DKG8`	Arabidopsis thaliana	sp\|P0DKG8\|RSH1L_ARATH Putative GTP diphosphokinase RSH1, chloroplastic	77.200%	Swiss-Prot	High
`F4JHA2`	Arabidopsis thaliana	sp\|F4JHA2\|RSH1C_ARATH Putative GTP diphosphokinase RSH1, chloroplastic	77.200%	Swiss-Prot	High
`Q9AYT5`	Oryza sativa subsp. japonica	sp\|Q9AYT5\|RSH1_ORYSJ Putative GTP diphosphokinase RSH1, chloroplastic	72.300%	Swiss-Prot	High

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