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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G001290
Reference: TK1151 Chr: Chr08 Coordinates: 322088-327425 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2913 bp · TkA08G001290|TK1151|cDNA

TAATTTCATTCATCAGCCGGCATCCCCTTTGTGCGACTCCATCGTTGCTTCGCTGCTTCACGCTTCAAACGCTGCTTCACGCCTCCATTGCTGCTTCCTTTTTCCTCGGTTCCTGCTGTACAGTTCTTCCGTGAGCCTCAATCGGTGAAGAAATTGCTTGTGGTGTTTATTGGTTGTAAAAGAGTTGAAAGATGGTGCAACATAAGGCTCAGCTGAAGAAGCAGCAGAAGCGCGGTGTAGACTTTAAAAAAATAAAGCGA...

CDS

Download CDS FASTA

2424 bp · TkA08G001290|TK1151|CDS

ATGGTGCAACATAAGGCTCAGCTGAAGAAGCAGCAGAAGCGCGGTGTAGACTTTAAAAAAATAAAGCGAAAGATTGGAAGGAAATTGCCGCCACCAAAGAACACCACGAATACGGAAGTGAAATCGAAAGCAATTGTATTACCGGAACAAAGTTTGGCATCGGAGAAGGGTGGTCTAGCTGTCAGCAAAAAAGGTTTGACTTTAAAAGAGCTGCTTAGTCAAACATCTCATCACAATGCCAAAGTCCGTAGAGATGCATT...

Protein

Download Protein FASTA

807 aa · TkA08G001290|TK1151|PROTEIN

MVQHKAQLKKQQKRGVDFKKIKRKIGRKLPPPKNTTNTEVKSKAIVLPEQSLASEKGGLAVSKKGLTLKELLSQTSHHNAKVRRDALIGIRDIFLKHPAELKIHRLTVIEKLRERMTDEDRVVRETLYQLLKAVVFPGCKEDNQGTFISLMMAYVFNAMTHLAFDVRLMAFKFFDLVVQHYPMSFSMYAEKIIQHYKEMLQQNQFNLHDKGKLKSVLAGLAYCLSLLPSNKRDDNSSENVVADRIILHAFESQVHEDRSV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G001290
TK1151 IDTkA08G001290
OH-1004 IDLXL04_026624
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)95.500
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G001290
LocationChr08:322088-327425 (+)
DescriptionSimilar to TEX10: Testis-expressed protein 10
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_026624 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000448 cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) Biological Process
GO:0005634 nucleus Cellular Component
GO:0005654 nucleoplasm Cellular Component
GO:0005730 nucleolus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0071339 MLL1 complex Cellular Component
GO:0120330 rixosome complex Cellular Component
KEGG gene cross-reference
gga:420993
hsa:54881
mmu:269536
pon:100171926
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.752
Rank 1 · TkA08G001290 · TK1151
Cytoplasm0.259
Rank 2 · TkA08G001290 · TK1151
Endoplasmic reticulum0.035
Rank 3 · TkA08G001290 · TK1151
Cell membrane0.034
Rank 4 · TkA08G001290 · TK1151
Golgi apparatus0.033
Rank 5 · TkA08G001290 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF24714TOR1L1_N67-206 aa
PF23271HEAT_GCN167-135 aa
PF23227HEAT_MROH2B_C68-178 aa
PF25757TPR_DNAAF568-130 aa
PF13646HEAT_269-131 aa
PF02985HEAT71-93 aa
PF02985HEAT109-134 aa
PF12333Ipi1_N147-213 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G001290PF24714TOR1L1_N672065.8e-0523.3
TkA08G001290PF23271HEAT_GCN1671350.01116.6
TkA08G001290PF23227HEAT_MROH2B_C681780.03114.3
TkA08G001290PF25757TPR_DNAAF5681300.659.8
TkA08G001290PF13646HEAT_2691310.113.6
TkA08G001290PF02985HEAT71930.1413.2
TkA08G001290PF02985HEAT1091340.1413.2
TkA08G001290PF12333Ipi1_N1472136.7e-0833.7
TkA08G001290PF23271HEAT_GCN11482020.01116.6
TkA08G001290PF02985HEAT1571790.1413.2
TkA08G001290PF02985HEAT2712810.1413.2
TkA08G001290PF25757TPR_DNAAF52712880.659.8
TkA08G001290PF24714TOR1L1_N4034675.8e-0523.3
TkA08G001290PF23271HEAT_GCN14354570.01116.6
TkA08G001290PF02985HEAT4484660.1413.2
TkA08G001290PF25781TPR_TEX104826173.3e-2279.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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