TkA07G424990 | RubberDandelionOmics

Gene overview

TkA07G424990

Reference: TK1151 Chr: Chr07 Coordinates: 107455399-107458364 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1707 bp · TkA07G424990|TK1151|cDNA

GTAGCTCCAGGTCATCTATGACTGTAACAACACTATAAGCAGTAGACCCCACAAAACTTCACTCATTTCTCGAACCTCCATCTTCCTTTTCATTAGCTAATCCATTTCAGCTCACCACACACCAGTTCTTGTTCCCCCTTTTTCTCTCTGCAAAACCCTTTTCGTATTCCCTGTAATACCAAATCAGATAAAATCCCTTGACTTTTGCGATACCCATCTGCCATTTCAACGATTCCCGATCTCCTATCTCCACCGCGTGT...

CDS

Download CDS FASTA

1104 bp · TkA07G424990|TK1151|CDS

ATGGCGGTCAGGGGCGTCGATTTTAAGTGGTACGATGGGTTTTTCCTGTCTATGCTTGCCACTAGTATAATTATAGTTGCAATCAACTGGAAACGTTACCATCTATGCACACATCCACTACATATCTGGATCGTGGTTGATTATACCACAGTCTTCATATTTCGTCTGTTGATGTTTGTCGACAATGGGCTTGCAGCTGGAATGGGATTAGATTTCGGCCGGCAGCAGAGACAAGCTCGGTTCTGTGGAAGAGCGGTGGT...

Protein

Download Protein FASTA

367 aa · TkA07G424990|TK1151|PROTEIN

MAVRGVDFKWYDGFFLSMLATSIIIVAINWKRYHLCTHPLHIWIVVDYTTVFIFRLLMFVDNGLAAGMGLDFGRQQRQARFCGRAVVLSILSIFLYPFLWAWTVIGSLWFTSSKNCLPEEGQKWGFLIWLLFSYSGLVCIAALCTKKWLNRRKAHSLRAQQGIPVSEYGVLVDMVRVPDWAFETAIGQEMRGMAQDAATSYHPGLYLTEPQREAVEALIQELPKFMLKAVPTDCSECPICLEEFHVGNEVRGLPCAHNFH...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G424990`
TK1151 ID	TkA07G424990
OH-1004 ID	LXL04_030709
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA07G424990

Location Chr07:107455399-107458364 (+)

Description Similar to SIS3: E3 ubiquitin-protein ligase SIS3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g47990`	E3 ubiquitin protein ligase that acts as a positive regulator of sugar signaling during early seedling development.	SUGAR-INSENSITIVE3, a RING E3 ligase, is a new player in plant sugar response.2010 · DOI: 10.1104/pp.109.150573

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_030709 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006952 defense response Biological Process

GO:0009416 response to light stimulus Biological Process

GO:0009788 negative regulation of abscisic acid-activated signaling pathway Biological Process

GO:0010182 sugar mediated signaling pathway Biological Process

GO:0016567 protein ubiquitination Biological Process

GO:0005634 nucleus Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009535 chloroplast thylakoid membrane Cellular Component

GO:0016020 membrane Cellular Component

GO:0031982 vesicle Cellular Component

KEGG gene cross-reference

ath:AT2G17730

ath:AT2G35910

ath:AT3G18930

ath:AT3G47990

ath:AT5G66070

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.275

Rank 1 · TkA07G424990 · TK1151

Endoplasmic reticulum0.267

Rank 2 · TkA07G424990 · TK1151

Golgi apparatus0.264

Rank 3 · TkA07G424990 · TK1151

Cell membrane0.234

Rank 4 · TkA07G424990 · TK1151

Lysosome / Vacuole0.219

Rank 5 · TkA07G424990 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF26753SIS3_N11-161 aa

PF12861zf-ANAPC1135-46 aa

PF13639zf-RING_2109-116 aa

PF12861zf-ANAPC11142-154 aa

PF11793FANCL_C142-151 aa

PF13639zf-RING_2144-152 aa

PF00097zf-C3HC4144-152 aa

PF12678zf-rbx1144-153 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G424990	`PF26753`	SIS3_N	11	161	2e-68	229.7
TkA07G424990	`PF12861`	zf-ANAPC11	35	46	0.025	15.3
TkA07G424990	`PF13639`	zf-RING_2	109	116	7.5e-14	52.4
TkA07G424990	`PF12861`	zf-ANAPC11	142	154	0.025	15.3
TkA07G424990	`PF11793`	FANCL_C	142	151	5.7	8.0
TkA07G424990	`PF13639`	zf-RING_2	144	152	7.5e-14	52.4
TkA07G424990	`PF00097`	zf-C3HC4	144	152	1.4e-07	31.9
TkA07G424990	`PF12678`	zf-rbx1	144	153	2.1e-05	25.4
TkA07G424990	`PF13639`	zf-RING_2	236	278	7.5e-14	52.4
TkA07G424990	`PF17123`	zf-RING_11	236	264	3.9e-10	40.0
TkA07G424990	`PF13923`	zf-C3HC4_2	236	277	1.2e-08	35.3
TkA07G424990	`PF14634`	zf-RING_5	236	278	0.0012	19.4
TkA07G424990	`PF11793`	FANCL_C	236	273	5.7	8.0
TkA07G424990	`PF13445`	zf-RING_UBOX	237	275	7.2e-08	33.0
TkA07G424990	`PF00097`	zf-C3HC4	237	277	1.4e-07	31.9
TkA07G424990	`PF12861`	zf-ANAPC11	237	280	0.025	15.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8GYT9`	Arabidopsis thaliana	sp\|Q8GYT9\|SIS3_ARATH E3 ubiquitin-protein ligase SIS3	71.900%	Swiss-Prot	High

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