TkA07G419870 | RubberDandelionOmics

Gene overview

TkA07G419870

Reference: TK1151 Chr: Chr07 Coordinates: 106050225-106052942 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1393 bp · TkA07G419870|TK1151|cDNA

CTAAATCAGATTTCACGTCTTTGCTTTGATGTCTCTCTGTTTCTTCCTCTACAACGATAATTAAGATCAGGGCTTTTCTGCTCATTTCTAGGGCTCCAACTGGGTCATAATCGCTTGGTTATTCTCGAATTTCATAACTTTTTAGTATGGGGAGGGTGAAGCTGAAAATCAAGAGATTAGAGAACATTGGCAATCGTCAAGTAACGTTTTCCAAAAGAAGAAACGGAATCTTAAAAAAAGCCAAGGAATTATCTGTGTTA...

CDS

Download CDS FASTA

1080 bp · TkA07G419870|TK1151|CDS

ATGGGGAGGGTGAAGCTGAAAATCAAGAGATTAGAGAACATTGGCAATCGTCAAGTAACGTTTTCCAAAAGAAGAAACGGAATCTTAAAAAAAGCCAAGGAATTATCTGTGTTATGTGATATCGACATCATCCTTCTTATGTTCTCTCCCACCGGAAAACCCACATTATTCACCGGACAACGGAGTAACATCGATGAGGTTATCGCAAAGTTTGCCAGATTAACACCACAAGAACGAGCAAAACGGAAATTGGAAAGCCT...

Protein

Download Protein FASTA

359 aa · TkA07G419870|TK1151|PROTEIN

MGRVKLKIKRLENIGNRQVTFSKRRNGILKKAKELSVLCDIDIILLMFSPTGKPTLFTGQRSNIDEVIAKFARLTPQERAKRKLESLEALKKTFKKLDHDVNIQDFAGASSQSAEDLSNHAMMLQSQLSDLHKRLSYWSNPDKIENVDHLKHMEDSLRESLDRIRIHKENFGQQKLIPLDCTNQFQNGLHLPLMMSNTQEDQSLPWLPNQENQNLIMADKQNYMPHRDGECSGVSLSNYSDLFTKGLEMDVKVDRSTQSG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G419870`
TK1151 ID	TkA07G419870
OH-1004 ID	LXL04_030630
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.700
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA07G419870

Location Chr07:106050225-106052942 (-)

Description Similar to AGL65: Agamous-like MADS-box protein AGL65

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g18750`	Probable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth.	MIKC* MADS domain heterodimers are required for pollen maturation and tube growth in Arabidopsis.2009 · DOI: 10.1104/pp.109.135806
`At2g03060`	Probable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth.	MIKC* MADS domain heterodimers are required for pollen maturation and tube growth in Arabidopsis.2009 · DOI: 10.1104/pp.109.135806
`At1g77980`	Probable transcription factor that forms a heterodimer with the MADS-box protein AGL30 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth.	MIKC* MADS domain heterodimers are required for pollen maturation and tube growth in Arabidopsis.2009 · DOI: 10.1104/pp.109.135806
`At1g22130`	Probable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth.	MIKC* MADS domain heterodimers are required for pollen maturation and tube growth in Arabidopsis.2009 · DOI: 10.1104/pp.109.135806

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_030630 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0006357 regulation of transcription by RNA polymerase II Biological Process

GO:0009555 pollen development Biological Process

GO:0010152 pollen maturation Biological Process

GO:0045944 positive regulation of transcription by RNA polymerase II Biological Process

GO:0080092 regulation of pollen tube growth Biological Process

GO:0005634 nucleus Cellular Component

GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding Molecular Function

GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific Molecular Function

GO:0003700 DNA-binding transcription factor activity Molecular Function

GO:0046983 protein dimerization activity Molecular Function

KEGG gene cross-reference

ath:AT1G18750

ath:AT1G22130

ath:AT1G77980

ath:AT2G03060

dosa:Os07g0108900

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.976

Rank 1 · TkA07G419870 · TK1151

Cytoplasm0.086

Rank 2 · TkA07G419870 · TK1151

Cell membrane0.022

Rank 3 · TkA07G419870 · TK1151

Endoplasmic reticulum0.015

Rank 4 · TkA07G419870 · TK1151

Plastid0.011

Rank 5 · TkA07G419870 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00319SRF-TF10-55 aa

PF10224DUF220578-92 aa

PF01486K-box86-92 aa

PF10224DUF2205103-135 aa

PF01486K-box113-174 aa

PF10224DUF2205149-165 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G419870	`PF00319`	SRF-TF	10	55	2e-22	79.1
TkA07G419870	`PF10224`	DUF2205	78	92	0.58	11.0
TkA07G419870	`PF01486`	K-box	86	92	2.1	9.2
TkA07G419870	`PF10224`	DUF2205	103	135	0.58	11.0
TkA07G419870	`PF01486`	K-box	113	174	2.1	9.2
TkA07G419870	`PF10224`	DUF2205	149	165	0.58	11.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q7X9I0`	Arabidopsis thaliana	sp\|Q7X9I0\|AGL65_ARATH Agamous-like MADS-box protein AGL65	53.400%	Swiss-Prot	High
`Q1PFA4`	Arabidopsis thaliana	sp\|Q1PFA4\|AGL30_ARATH Agamous-like MADS-box protein AGL30	51.700%	Swiss-Prot	High
`Q1PFC2`	Arabidopsis thaliana	sp\|Q1PFC2\|AGL66_ARATH Agamous-like MADS-box protein AGL66	38.300%	Swiss-Prot	Low
`Q9LM46`	Arabidopsis thaliana	sp\|Q9LM46\|AG104_ARATH Agamous-like MADS-box protein AGL104	42.000%	Swiss-Prot	Low

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