TkA07G415270 | RubberDandelionOmics

Gene overview

TkA07G415270

Reference: TK1151 Chr: Chr07 Coordinates: 104935493-104948047 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1902 bp · TkA07G415270|TK1151|cDNA

AAAAAAACCTCGCCGGTTACTGTTCTTCTTCTTCCCTTTCTTCCTCCGTAATCTCCTTTTTTTTTTTACTGATTCCACAAGCAAACAGGAATCAAAGAGCTCATTGCAGTGACGAAATTCCCAGAATCCATATCCACTTTCCTTATTTCATGGATTTCCCAAATCATCGAATTCCATATAATCAATATATGTAGTTGTATGTGATTATCGATTGCCAATATCTTACCCATGAACGATGCATCGCCTCCTTGAGATCATTG...

CDS

Download CDS FASTA

3357 bp · TkA07G415270|TK1151|CDS

ATGGCGCTGTTCAGACGCTTCTTTTATCGTAAGCCGCCGGATCGCCTCCTTGAGATCACCGACAGGGTTTTCGTGTTCGATTGCTGCTTCTCGACTGATGTAATGGAAGAAGATACGTACAAGACGTACATGGGGGGGATTGTAGCTCAGCTTCAAGAGTATTTCCCTGAATCTTCTTTCATGGTGTTCAACGTTAAAGAAGGTGGTGATAAAAAGACTAAACTCTCTGATGTCTTATCTACATACGATATGAAAATCAC...

Protein

Download Protein FASTA

1118 aa · TkA07G415270|TK1151|PROTEIN

MALFRRFFYRKPPDRLLEITDRVFVFDCCFSTDVMEEDTYKTYMGGIVAQLQEYFPESSFMVFNVKEGGDKKTKLSDVLSTYDMKITEYPWQYEGCPMLALEMINQFLISSDSWLTLAENKNVLLMHCERGGWPVLAILLAGLLLFRKQYSGEQKTLEMVYKQAPRELLHLLSPLNPQPSQMRYLQYITKRNLGLEWPPLDAPLALDCIILRVLPVIGGKGCRPIIRVYGQDPFSSVKSCKLLFSTCSRKKHARYYRKDE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G415270`
TK1151 ID	TkA07G415270
OH-1004 ID	LXL04_030611
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	96.700
Protein coverage (%)	TK1151 97.674 / OH-1004 50.252 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA07G415270

Location Chr07:104935493-104948047 (+)

Description Similar to FH20: Formin-like protein 20

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`UniProt: Q9FLQ7`	Formin-like protein 20.	No verified direct reference in this release
`At2g25050`	Formin-like protein 18.	No verified direct reference in this release
`At5g58160`	Formin-like protein 13.	No verified direct reference in this release
`At3g32400`	Formin-like protein 17.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os08g0280200`	Formin-like protein 6.	No verified direct reference in this release
`Os07g0596300`	Formin-like protein 5.	No verified direct reference in this release
`UniProt: Q7XWS7`	Formin-like protein 12.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_030611 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0005737 cytoplasm Cellular Component

GO:0004721 phosphoprotein phosphatase activity Molecular Function

KEGG gene cross-reference

ath:AT5G07740

dosa:Os07g0596300

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.592

Rank 1 · TkA07G415270 · TK1151

Cell membrane0.360

Rank 2 · TkA07G415270 · TK1151

Nucleus0.176

Rank 3 · TkA07G415270 · TK1151

Golgi apparatus0.064

Rank 4 · TkA07G415270 · TK1151

Endoplasmic reticulum0.051

Rank 5 · TkA07G415270 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF10409PTEN_C2202-336 aa

PF02181FH2896-1116 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G415270	`PF10409`	PTEN_C2	202	336	1e-31	110.2
TkA07G415270	`PF02181`	FH2	896	1116	3.9e-68	231.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FLQ7`	Arabidopsis thaliana	sp\|Q9FLQ7\|FH20_ARATH Formin-like protein 20	46.400%	Swiss-Prot	Medium
`Q9SK28`	Arabidopsis thaliana	sp\|Q9SK28\|FH18_ARATH Formin-like protein 18	41.400%	Swiss-Prot	Medium
`Q9LVN1`	Arabidopsis thaliana	sp\|Q9LVN1\|FH13_ARATH Formin-like protein 13	43.100%	Swiss-Prot	Medium
`Q9LH02`	Arabidopsis thaliana	sp\|Q9LH02\|FH17_ARATH Formin-like protein 17	55.400%	Swiss-Prot	Medium
`Q6ZCX3`	Oryza sativa subsp. japonica	sp\|Q6ZCX3\|FH6_ORYSJ Formin-like protein 6	44.600%	Swiss-Prot	Medium
`Q84ZL0`	Oryza sativa subsp. japonica	sp\|Q84ZL0\|FH5_ORYSJ Formin-like protein 5	41.600%	Swiss-Prot	Medium
`Q7XWS7`	Oryza sativa subsp. japonica	sp\|Q7XWS7\|FH12_ORYSJ Formin-like protein 12	59.600%	Swiss-Prot	Medium

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