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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G414560
Reference: TK1151 Chr: Chr07 Coordinates: 104772928-104774702 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1667 bp · TkA07G414560|TK1151|cDNA

GTTCCAAAAGTAACCACCTTGTTGAAGCGCTTTCTCACAGCCAAACAATTGAAGCAACTTCATGGATTAATACTCGTTCACGGCCTTAATCATCTCGAGGGGCTGGTAATCCGCCATCTTATAAGCTTTCCAAGCGATTACTATCAAGCATTTGCTCAGTACGTGGATATGCAAAGATCAGGACTCTTACCTTCCTCATTTACCGTGGCATCTGCTTTGAAGGCATGTGCAAGGCTTGGTAACGAAAATGGCGGGATGAT...

CDS

Download CDS FASTA

1626 bp · TkA07G414560|TK1151|CDS

GTTCCAAAAGTAACCACCTTGTTGAAGCGCTTTCTCACAGCCAAACAATTGAAGCAACTTCATGGATTAATACTCGTTCACGGCCTTAATCATCTCGAGGGGCTGGTAATCCGCCATCTTATAAGCTTTCCAAGCGATTACTATCAAGCATTTGCTCAGTACGTGGATATGCAAAGATCAGGACTCTTACCTTCCTCATTTACCGTGGCATCTGCTTTGAAGGCATGTGCAAGGCTTGGTAACGAAAATGGCGGGATGAT...

Protein

Download Protein FASTA

541 aa · TkA07G414560|TK1151|PROTEIN

VPKVTTLLKRFLTAKQLKQLHGLILVHGLNHLEGLVIRHLISFPSDYYQAFAQYVDMQRSGLLPSSFTVASALKACARLGNENGGMMIHCQVHSHGFCGDVYVETALLGFYTKVKDMETAQKLFDEMSERNVVSWNSMIDGYVRSGNIPLAEKVFSTMPNKDTVSWNTMVSGHSKTRNMEKALRLFQEMPERNPTSWNVMIRGYIDSDNIDLAQNFYNSMPQRNTISCITMITGYTKHGDVESARELFNNMSQKDQSLYN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA07G414560
TK1151 IDTkA07G414560
OH-1004 IDLXL04_030606
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)93.800
Protein coverage (%)TK1151 100.000 / OH-1004 97.797
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G414560
LocationChr07:104772928-104774702 (+)
DescriptionSimilar to PCMP-E6: Pentatricopeptide repeat-containing protein At4g22760
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g22760 Pentatricopeptide repeat-containing protein At4g22760. No verified direct reference in this release
At2g22410 Pentatricopeptide repeat-containing protein At2g22410, mitochondrial. No verified direct reference in this release
At2g20540 Pentatricopeptide repeat-containing protein At2g20540. No verified direct reference in this release
At4g18750 Plays a major role in single RNA editing events in chloroplasts.
Identification of two pentatricopeptide repeat genes required for RNA editing and zinc binding by C-terminal cytidine deaminase-like domains.2013 · DOI: 10.1074/jbc.m113.485755
At2g13600 Pentatricopeptide repeat-containing protein At2g13600. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_030606 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006397 mRNA processing Biological Process
GO:0009451 RNA modification Biological Process
GO:0010214 seed coat development Biological Process
GO:0016556 mRNA modification Biological Process
GO:0140547 acquisition of seed longevity Biological Process
GO:1900865 chloroplast RNA modification Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0005773 vacuole Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT2G45350
ath:AT4G02750
ath:AT4G16835
ath:AT4G22760
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.630
Rank 1 · TkA07G414560 · TK1151
Plastid0.191
Rank 2 · TkA07G414560 · TK1151
Nucleus0.056
Rank 3 · TkA07G414560 · TK1151
Cytoplasm0.038
Rank 4 · TkA07G414560 · TK1151
Cell membrane0.006
Rank 5 · TkA07G414560 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF25064ARM_TT21_5th38-78 aa
PF29070MSC6_N46-81 aa
PF13041PPR_249-78 aa
PF17177PPR_long49-88 aa
PF13812PPR_356-83 aa
PF01535PPR72-97 aa
PF13812PPR_393-131 aa
PF24760TPR_IF140_C98-127 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G414560PF25064ARM_TT21_5th38785.5e-0627.4
TkA07G414560PF29070MSC6_N46812.2e-1867.2
TkA07G414560PF13041PPR_249781.1e-74247.1
TkA07G414560PF17177PPR_long49889.4e-1865.1
TkA07G414560PF13812PPR_356838.5e-33113.0
TkA07G414560PF01535PPR72972.4e-75244.4
TkA07G414560PF13812PPR_3931318.5e-33113.0
TkA07G414560PF24760TPR_IF140_C981271.3e-0526.3
TkA07G414560PF05843Suf1001250.04912.9
TkA07G414560PF25058ARM_TT211011290.0116.5
TkA07G414560PF13343SBP_bac_61011560.01815.3
TkA07G414560PF13041PPR_21031321.1e-74247.1
TkA07G414560PF17049AEP11031441.2e-0525.3
TkA07G414560PF09295ChAPs1031320.0001221.9
TkA07G414560PF28771RMD9_mid1031300.01915.5
TkA07G414560PF01535PPR1051322.4e-75244.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
P0C8Q5Arabidopsis thalianasp|P0C8Q5|PP336_ARATH Pentatricopeptide repeat-containing protein At4g2276059.900%Swiss-ProtHigh
Q9SJZ3Arabidopsis thalianasp|Q9SJZ3|PP169_ARATH Pentatricopeptide repeat-containing protein At2g22410, mitochondrial33.300%Swiss-ProtLow
Q9SIL5Arabidopsis thalianasp|Q9SIL5|PP165_ARATH Pentatricopeptide repeat-containing protein At2g2054030.200%Swiss-ProtLow
Q9SN39Arabidopsis thalianasp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein DOT4, chloroplastic30.600%Swiss-ProtLow
Q9SIT7Arabidopsis thalianasp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g1360029.900%Swiss-ProtLow

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