TkA07G406200 | RubberDandelionOmics

Gene overview

TkA07G406200

Reference: TK1151 Chr: Chr07 Coordinates: 102131872-102136941 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3046 bp · TkA07G406200|TK1151|cDNA

TAATAAACAAATATAGAAGATTTTAACTACGTCGTCTCAAAAAAGTGGTTTTGAAAATCAAAACCAACTATAAAATCTTCGCCTTCTTAATTTTTAGTTTGTCTAAATCAAAAACAATTTTGAGTCAAAATATCCCTATTTTAGGTTCAAAAAACAAAAGTTAAAATCAATAAGATACAAAAGTGAAAACATCCTATCATAAGGGACCAACTTGAAACGCTATGAAAACCACAGGGAGCAAATCGGAAGATACAACCCTA...

CDS

Download CDS FASTA

1947 bp · TkA07G406200|TK1151|CDS

ATGACTCCTGCATCATCATCGGCATCAACAGCGCTGCCAGGTTGCAAACGAACCTCGTTACGAATCAACCCAAAAACTCTGCGGATTCCCGTATCGGGTTCATCTTGTCACATTGATTTCCTGAAATCAATATCCAACCCAAATGTCTTTTTAAGACCAATAGTAAGATGCGAATTCCCAAAAACACTCACCGTTTCATTGTGCTTCTCTTTTCTATACTCTTCGCCTTCTCGTTGTCCCCAATTTCCTTCTTTGGTTCC...

Protein

Download Protein FASTA

648 aa · TkA07G406200|TK1151|PROTEIN

MTPASSSASTALPGCKRTSLRINPKTLRIPVSGSSCHIDFLKSISNPNVFLRPIVRCEFPKTLTVSLCFSFLYSSPSRCPQFPSLVPDLGFRSSRRFFTTKRSQGRFPLKSSYKMEAPSDGTTTTETPFEKSQVSSVWASPNGGQKIEIGKNIFCNRAVNMKNIVAVGFDMDYTLAQYKPETFESLAYNGTVKKLVTNLGYPNELLDWSFDWTYMVRGLVLDKKRGNILKMDRHKYVKVAYHGFRLLSKDEKVATYGNTL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G406200`
TK1151 ID	TkA07G406200
OH-1004 ID	LXL04_030476
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	98.100
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA07G406200`
Location	Chr07:102131872-102136941 (+)
Description	Similar to NT5C2: Cytosolic purine 5'-nucleotidase
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_030476` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0000255 allantoin metabolic process Biological Process GO:0006204 IMP catabolic process Biological Process GO:0046037 GMP metabolic process Biological Process GO:0046040 IMP metabolic process Biological Process GO:0046054 dGMP metabolic process Biological Process GO:0046055 dGMP catabolic process Biological Process GO:0046085 adenosine metabolic process Biological Process GO:0050689 negative regulation of defense response to virus by host Biological Process GO:0070936 protein K48-linked ubiquitination Biological Process GO:0140374 antiviral innate immune response Biological Process GO:0005737 cytoplasm Cellular Component GO:0005829 cytosol Cellular Component
KEGG gene cross-reference	bta:281951 hsa:22978 mmu:76952 pon:100172749 rno:100363253 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.792

Rank 1 · TkA07G406200 · TK1151

Mitochondrion0.225

Rank 2 · TkA07G406200 · TK1151

Nucleus0.051

Rank 3 · TkA07G406200 · TK1151

Cytoplasm0.047

Rank 4 · TkA07G406200 · TK1151

Peroxisome0.016

Rank 5 · TkA07G406200 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF057615_nucleotid153-643 aa

PF00702Hydrolase166-402 aa

PF09454Vps23_core269-282 aa

PF00702Hydrolase476-490 aa

PF25541TBCA_PH518-581 aa

PF09454Vps23_core523-560 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G406200	`PF05761`	5_nucleotid	153	643	7.6e-171	569.8
TkA07G406200	`PF00702`	Hydrolase	166	402	0.045	14.9
TkA07G406200	`PF09454`	Vps23_core	269	282	0.38	11.5
TkA07G406200	`PF00702`	Hydrolase	476	490	0.045	14.9
TkA07G406200	`PF25541`	TBCA_PH	518	581	0.043	14.2
TkA07G406200	`PF09454`	Vps23_core	523	560	0.38	11.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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