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How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G405890
Reference: TK1151 Chr: Chr07 Coordinates: 102048679-102052414 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA No cDNA sequence available

cDNA

No cDNA sequence is available for this reference.

CDS

Download CDS FASTA

2118 bp · TkA07G405890|TK1151|CDS

ATGGGTTTCAATAAGATGGGTTTACGTTTACCCATAGCTAGATTTGGTCGACAATCGAAAAAATCATACGGATTTTTCATTAAGTTCGCGTCAGTGACAATTCTAGGGTTATGTTTTGTGTTCGTTTGGTATGTATTTTCTCCTTCAGCTTCTTCCGTCACATATCAAAGAAGCACGTTCGGTGAAATCGCTGAGCCTGTTTCCGAAAGGGGGCAAATTAGAAAAACCAAATCTCCCGTTCTAATCAACAACGAACCCGA...

Protein

Download Protein FASTA

705 aa · TkA07G405890|TK1151|PROTEIN

MGFNKMGLRLPIARFGRQSKKSYGFFIKFASVTILGLCFVFVWYVFSPSASSVTYQRSTFGEIAEPVSERGQIRKTKSPVLINNEPDLSLQKVEEEKKRVNASSISDSVVPEIPKKEEKHVQIVEKSEKNETQVDENGSEGTESESDTEDSKENEAEEGEHTADSDLVDPNQTDEIDEVNAKLGKKKKFKGPLFDPKAEYNWKLCTTRSKHNYIPCIDNESTSKRNQMYRHHERSCPKNSLMCLVPLPHDGYQTPVNWPQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA07G405890
TK1151 IDTkA07G405890
OH-1004 IDLXL04_030474
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)98.600
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G405890
LocationChr07:102048679-102052414 (-)
DescriptionSimilar to At1g19430: Probable methyltransferase PMT28
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g19430 Probable methyltransferase PMT28. No verified direct reference in this release
At5g64030 Probable methyltransferase PMT26. No verified direct reference in this release
At3g51070 Probable methyltransferase PMT27. No verified direct reference in this release
At1g29470 Probable methyltransferase PMT24. No verified direct reference in this release
At2g34300 Probable methyltransferase PMT25. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_030474 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0032259 methylation Biological Process
GO:0000138 Golgi trans cisterna Cellular Component
GO:0000139 Golgi membrane Cellular Component
GO:0005576 extracellular region Cellular Component
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0005768 endosome Cellular Component
GO:0005783 endoplasmic reticulum Cellular Component
GO:0005789 endoplasmic reticulum membrane Cellular Component
GO:0005794 Golgi apparatus Cellular Component
GO:0005797 Golgi medial cisterna Cellular Component
KEGG gene cross-reference
ath:AT1G19430
ath:AT1G29470
ath:AT2G34300
ath:AT3G51070
ath:AT5G64030
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.778
Rank 1 · TkA07G405890 · TK1151
Endoplasmic reticulum0.080
Rank 2 · TkA07G405890 · TK1151
Cell membrane0.071
Rank 3 · TkA07G405890 · TK1151
Extracellular0.059
Rank 4 · TkA07G405890 · TK1151
Cytoplasm0.045
Rank 5 · TkA07G405890 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF20922Anamorsin_N51-74 aa
PF03141Methyltransf_29212-700 aa
PF13489Methyltransf_23326-428 aa
PF13649Methyltransf_25328-420 aa
PF13847Methyltransf_31328-447 aa
PF08241Methyltransf_11329-424 aa
PF08242Methyltransf_12329-422 aa
PF05148Methyltransf_8374-451 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G405890PF20922Anamorsin_N51740.0002321.6
TkA07G405890PF03141Methyltransf_292127002.7e-188627.4
TkA07G405890PF13489Methyltransf_233264280.0002721.4
TkA07G405890PF13649Methyltransf_253284202.5e-0628.8
TkA07G405890PF13847Methyltransf_313284470.0004420.8
TkA07G405890PF08241Methyltransf_113294247e-1040.1
TkA07G405890PF08242Methyltransf_123294220.00219.5
TkA07G405890PF05148Methyltransf_83744510.1113.0
TkA07G405890PF20922Anamorsin_N3844310.0002321.6
TkA07G405890PF08242Methyltransf_126216610.00219.5
TkA07G405890PF13489Methyltransf_236226670.0002721.4
TkA07G405890PF13847Methyltransf_316236670.0004420.8
TkA07G405890PF13649Methyltransf_256246592.5e-0628.8
TkA07G405890PF08241Methyltransf_116256637e-1040.1
TkA07G405890PF20922Anamorsin_N6476670.0002321.6
TkA07G405890PF05148Methyltransf_86476740.1113.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LN50Arabidopsis thalianasp|Q9LN50|PMTS_ARATH Probable methyltransferase PMT2861.200%Swiss-ProtHigh
Q8L7V3Arabidopsis thalianasp|Q8L7V3|PMTQ_ARATH Probable methyltransferase PMT2649.200%Swiss-ProtMedium
Q9SD39Arabidopsis thalianasp|Q9SD39|PMTR_ARATH Probable methyltransferase PMT2748.000%Swiss-ProtMedium
Q6NPR7Arabidopsis thalianasp|Q6NPR7|PMTO_ARATH Probable methyltransferase PMT2447.700%Swiss-ProtMedium
Q0WT31Arabidopsis thalianasp|Q0WT31|PMTP_ARATH Probable methyltransferase PMT2546.300%Swiss-ProtMedium

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