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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G404980
Reference: TK1151 Chr: Chr07 Coordinates: 101826896-101834531 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

5467 bp · TkA07G404980|TK1151|cDNA

CTTTCAATCGCCGAGCATATCTTTCACACTTTTAGGCTTCATTTGATGTAGTAATTACAGATGGCCGGAGCGATTCGGAACGACGGTGAATCGTCCACGTCGTCGGAGGCGGTGGGGATTCCGACCGGTTTGAATCGAATTAAGACACGTATAGCGTCTACCTCCAACGATAATCAGCATCTCAGCTCAAATAATCACCATAGTAAGTCTATAGCCAGCCGTTTCAAGCAGAATCATCAGAGGTCTTTTAGCAAAGGATT...

CDS

Download CDS FASTA

3117 bp · TkA07G404980|TK1151|CDS

ATGGCCGGAGCGATTCGGAACGACGGTGAATCGTCCACGTCGTCGGAGGCGGTGGGGATTCCGACCGGTTTGAATCGAATTAAGACACGTATAGCGTCTACCTCCAACGATAATCAGCATCTCAGCTCAAATAATCACCATAGTAAGTCTATAGCCAGCCGTTTCAAGCAGAATCATCAGAGGTCTTTTAGCAAAGGATTCGTGAAGCTTCATTCGTCTAGAGAAGGACTCCGTAAAGGAAAAAAAATAGCCCGATGGTT...

Protein

Download Protein FASTA

1038 aa · TkA07G404980|TK1151|PROTEIN

MAGAIRNDGESSTSSEAVGIPTGLNRIKTRIASTSNDNQHLSSNNHHSKSIASRFKQNHQRSFSKGFVKLHSSREGLRKGKKIARWLTSHLSKDSDKAIRDKPPEAEKRNLEGKAFGKETLSGKQPKVRRSTFGKQTEAGNTDKMPEVMKSFSHELGPKGGIRPLHTRAHSFSDLKELLRSLRSNFNAAKELVNTELAFFKGEVIEVSQRSETLSVEEQRSISDLLILAKECIQMSCEDFRIKCESIVQDLTKKRQDCQT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA07G404980
TK1151 IDTkA07G404980
OH-1004 IDLXL04_030463
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G404980
LocationChr07:101826896-101834531 (-)
DescriptionSimilar to IRE4: Probable serine/threonine protein kinase IRE4
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g45160 Probable serine/threonine protein kinase IRE4. No verified direct reference in this release
At3g17850 May be involved in root hair elongation. No verified direct reference in this release
At1g48490 Probable serine/threonine protein kinase IRE3. No verified direct reference in this release
At5g62310 Modulates root tip growth. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_030463 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0035556 intracellular signal transduction Biological Process
GO:0042742 defense response to bacterium Biological Process
GO:0046777 protein autophosphorylation Biological Process
GO:0005634 nucleus Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0035618 root hair Cellular Component
GO:0004674 protein serine/threonine kinase activity Molecular Function
GO:0005524 ATP binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
GO:0016301 kinase activity Molecular Function
GO:0106310 protein serine kinase activity Molecular Function
KEGG gene cross-reference
ath:AT1G45160
ath:AT1G48490
ath:AT3G17850
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.582
Rank 1 · TkA07G404980 · TK1151
Nucleus0.327
Rank 2 · TkA07G404980 · TK1151
Cell membrane0.148
Rank 3 · TkA07G404980 · TK1151
Golgi apparatus0.072
Rank 4 · TkA07G404980 · TK1151
Mitochondrion0.060
Rank 5 · TkA07G404980 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF17667Pkinase_fungal162-194 aa
PF26031IREH1167-285 aa
PF19974TCAD9509-565 aa
PF17667Pkinase_fungal543-585 aa
PF13095FTA2628-670 aa
PF00069Pkinase632-918 aa
PF07714PK_Tyr_Ser-Thr633-779 aa
PF14531Kinase-like637-678 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G404980PF17667Pkinase_fungal1621940.001917.7
TkA07G404980PF26031IREH11672853.9e-47160.2
TkA07G404980PF19974TCAD95095650.4110.5
TkA07G404980PF17667Pkinase_fungal5435850.001917.7
TkA07G404980PF13095FTA26286700.01815.4
TkA07G404980PF00069Pkinase6329185.2e-67226.7
TkA07G404980PF07714PK_Tyr_Ser-Thr6337793.8e-33115.6
TkA07G404980PF14531Kinase-like6376781.9e-0524.8
TkA07G404980PF01636APH7057800.00218.6
TkA07G404980PF03109ABC17067772.8e-0524.1
TkA07G404980PF01163RIO17067740.01815.4
TkA07G404980PF06293Kdo7077740.03714.2
TkA07G404980PF19974TCAD97167740.4110.5
TkA07G404980PF14531Kinase-like7287751.9e-0524.8
TkA07G404980PF13095FTA27367740.01815.4
TkA07G404980PF17667Pkinase_fungal7408420.001917.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
F4HPN2Arabidopsis thalianasp|F4HPN2|IRE4_ARATH Probable serine/threonine protein kinase IRE451.200%Swiss-ProtHigh
F4J6F6Arabidopsis thalianasp|F4J6F6|IREH1_ARATH Probable serine/threonine protein kinase IREH144.400%Swiss-ProtMedium
F4HYG2Arabidopsis thalianasp|F4HYG2|IRE3_ARATH Probable serine/threonine protein kinase IRE341.200%Swiss-ProtMedium
Q9LE81Arabidopsis thalianasp|Q9LE81|IRE_ARATH Probable serine/threonine protein kinase IRE42.700%Swiss-ProtMedium

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